| Id Trinity | TRINITY_DN49597_c2_g1_i30 |
|---|---|
| Name Transcript | Ll_transcript_407204 |
| Sequence | ATTCTTTTAGAAACTTATTCTCCCTCATTCTATAAATATTGTTCATTATATTATTAATTTTTTATTACTATTTTTGAGTGAGTAATGATAAAAAATGAAT TAGGATGATCAGGAATATATGCATGCTTGCTTCAATTTTCTTACCGCCACGTCATGGGGTACATGATACATCACACACGATGAATAGAATGAACGCATGA ATTCAACTTTTGAAGCACTCACTCATTGGTTAGATCGCAGCAACATAGAGCGATAATCAACAATGACGAAGCGATCCTACAAAACTGAGTTAGGTTGCAT AGCTTGCGATGAACTCGGCGAACTCGGTGCTGGAAAACCGGGTTGGCTAGTTGACAATCCCAACCTTCTCTCCGCCATCGACACTCACTCCCTCGCCCTC GCTAACCGCTCTAATATCCTCATCCTCTCATGGTCCGACCCGGATTCCGACCGGGTCAAAATCCGACCCGATTTATCTCCGATTCATGCCGAGCATATCT CCGCCATCGAGTGGCTGGTTTTTTATGATGTCCGCGTCATCGTGGCGGGAACATCGTGTGGCTTTCTCTTCTTTTACTCTTTTCGTGGTGATTTGATTCA TAGACAGGTAAATTTTTTGGTTTATTCCATTATTACCCCTTTACCTAACTTGTTGAGGAATTGAATTATCTGTTTTCTGCTGAGTAAGGCTATGGACCCA TGAGAAAGTGGTATTATAGTTTAATCATATGTAGTTGGCAATAAAATGAGTCATTTTATCGGCATATTCAGTTTCAGTGTATTATTTGTGTGGGATTATG TTGAATCAATCTCTGTTGCTGTGAATGGAGAATAGATTTTCCGGAGAGGATCCGAATTGCTGCGTTTTTAAAAGGAAGAAAAAAGTACAGTGAAACGTCA ATCTGGTCCATGAGATTATGGAAATGTTAATGTAGTCTGACTTTAGACACTGTCAATAATTCGGTACCTGTGAGAAACTTGTAAATTTTCTCTGGCAATT TACTACAATGTGCAAGGTCAGGGATCTAATTGATGTATTTGAAGACAAAGTTAATCGATGGTATCAATTGATATTTTAATTGAAAAGAAAATAGGGTAGC ATTTGGCACCAGAGCAGAAAGGATGCTTAAAAGTTAAAAGATTGGAATATCATGTTATGTTCTCTTTGGTTCCACCCTTTTAGTGAAGCAAAATATGTCT CACTTTTTAATTCTCGTGTCTTGTTTCTTTATATAATAAGCCAAACATAGAGCCATGTTTCTGTTCTTTGTTGTTCTAACAAGTCTACAAAAATTTGCTT CAAGATATGAATTGTATGTGACAATTTGTGTTAGAGTCCCTCTTATTGACATGCTTAAATATTGACTGATTGTTAGTTTCCCCAAGCAGCAATTCTCCCT CGAATAGGTTAACATATTTTTTGTATATCTGGATAAGTACTGGGTGTTTATAAAATTTCTCTATTACAGTCTTCTTGTCGCGTTAATATATAGGGAGAAT TTCATTTTAAGACCTGAAAAACATTTATTATTCTGTAAGACCAATATGATCATTTAGCTCCCAAATTGGGCCATTAGAAAGTATTTATTCTCATGTCCAT GACACGATAGACAAACTTTTTAAAATGATCAAATTATTTGCTTTGATGATGAATCTCTAGTTTGCCAATTCAGCCTTGAACATAATAACCAATATAACTT TCAGGTCCTTGATTACAACGCTCCTTAAAGTTTATTTGAATTGATTTTATTGTTCTTTCAAATAAAATTTTAAATAGAAATAAAATAATTTGGGTGCAAG TTTAAGATTGGAATATTGATAAGGTTTACACATCGGAATATCATATTAAAAATGAGATTCTATATGAAAGTTTACAAGTACATGCATATTTGTTCAATTT TTGCATTGTTTAGTCTTATATCAATTTGTTCCCCCATAGATGATTTATCCTGGACAAGTTTTAAAGTTAAGAGTTCGTGGAGTAAAGAAAGATTTGATTC AAGATACTTCCTCAGAAGAGTTTTGTGTCATTATGCCTGGTGTAATTGCCCAATTTGATGGCTCTGATATTCAGAATATGCTGCAGAAATGGTTTCAAGA AGCACATGCTCAATTTTGGGGTCAAAAGCCAAAGAGCCACGATTTAGAAGATTTTGAGAATTCTTATGGAAAATTACCTCACCAATTATGGAATATCGGC AAGTATGGTACTTGTGCTGACGCAGCACTCACTGGCATAATGCCTCCTCCACTAATGGAATACCAGCTGCTTTTATTGTTGGACAGTCAAGTCAACATTA TTATTGTGCAGTGGCTGTTGGAGAGGATGCTGTGATTTCAGCATACAGACTTTCTGAGGACAAAGGCAGGTCTTTAGTGGGAGCTATCTTGTCTAAAGTT GTACCTGCAACAGTTTCCACAATAGCTTCTTTTTCTAAAATGATTTGGCGGAGTGAACAGACTTCTCCAAAGAAATCAGAACAGAAGCCTCAGTCATTTG CTCGAGTTTCACCCCTGACATGTTTAAAGGATCACCCAAGGAAGGGTGAAAAGCTCACCTTATCTCCAAGTGGTACTTTGGCTGCTATAACAGATTCGCT TGGTCGCATATTGCTGCTTGATACTCAAGCACTTGTAGTGGTGCGCTTATGGAAGGGATACAGGGATGCAAGCTGTTTATTCATGGAGATATTGGTGAAT AAAGATACTGCATCAACAAGCTCTACGAATCGTGAACCAGTGAAGAGTGATTACTGCTTGTGTTTGGCTATTCATGCACCTAGAAAAGGAATTATTGAGA TCTGGCAAATGAGAACTGGACCACGTCTTAGAACGATTCGATGTAGAAAAGGTAGCAAAATGTTGCAACCCTCTTATAGGTTTGGCGCATCGATGTCCTC TCCCTATGTCCCTTTGGAAGTTTTCTTGTTAAATGGAGACTCGGGTGTGATATCAGTTATAAACAGGAACATGGACTCTTGATGTGGTGATTTTTCTTCT TTTTCTCAAACGAGATATTATGTATTCTCATATTTCAATATAGTAATGGTGATGATTGTTGCCTTATGCCAATACCCTTTATTTTTAATGAAAATTATAT ATTACCGAAAAAAAAâBLAST |
| Tissue | pods |
| Gene name | LI_gene_170689; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_407204
| Blastp | - |
|---|---|
| Blastx | Rab3 GTPase-activating protein non-catalytic subunit from Rattus with 32.97% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_003540058.1) |
| Pfam | Rab3 GTPase-activating protein regulatory subunit N-terminus (PF14655.5) |
| Rfam | - |
| GO | - |