Ll_transcript_416368

• Id Trinity: TRINITY_DN49610_c0_g2_i12
• Name Transcript: Ll_transcript_416368
• Sequence: AGAAACCAAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACATTCTTCTTTGCATCAAAAGAGACAACATAAATGAATTAAC ACCCAACATCTTCACTCCTTATTCTTCTTTCTATTAAGACCAACACTTTCAATTCAAACCACCCCTTTTACTTTCTCCCTCGCATAAGATAGATATTAGA AAGATGGCATCAGCAGAAGCAGCTTCTGATGGGGCTGGTCCGAGATATGCACCTGATGATCCTACTCTTCCACAGCCATGGAAGGGTTTGATCGATGGTA GCACCGGTGTGATGTACTACTGGAATCCTGAAACCAATGATACTCAGTATGAAAGACCAGCTCCTTTGGCCCCACCTGTGCCTTCGGGGCCCACACCCGG GGCGTCTACGCCGAGCTTGGCGCCCATACCGGGTGCTCACATGGTACAACCTAGTGGGGTGGTGGCACAGAATGGGCAAGCGCACTCGTCACAACAACAG CAGGGGAGTCACCTCAGCCAACAATATGGGCAACCGATGCTGCAGCACCAGCCTTCTCAGGCTGGCCAATCTGCACAGCAGCAGAATTCTCAGATGTCAC AGTCTGCGCCACAGCCGGGATATCAAGCCAGACCACATTTGATGCATGCTCAAGGACAACAAATGATGCATCCTCAAGGACAGCAAATGCATTATCAGAT GCCGTCGCCGCATTCCCAGCATTATGGGCAAGGACCACCTCAGGATCATAGCTCGCTTAACATGCAACCACAAGCACCTCAATTCACTCCCCAGAACATG CAGTATATGTCATATCAGCAAAACATGATTCAATCTGGGCAACCGAATTCCCTGCCGATGCAGCCGAACATGAATACCTCTGGGCAACCTAACTCCCAGC ACATTCAGCATCATATCATGCATGGTCAGCCCCCTTTTGAAAGTCAACAAGATTATAAAGCAGCTTATCCAAAGACAGAGGAAACGGAGTTTAAAAATGG AAGCCAAACTGGACATTCACCATCCCAGTATCAACAAAGAAGTGGTTTGCCTGTTCAAAACAATCAGAGTGTTCCTGCTGATATCACTTCTCATCAATTG CCAAACATAGGTGTTAATGCTGGCCACCCACAACAGTTCAGGGGTTTATCAGGAAACATGCATCAGTCTCCCTCGGCACTGCAGTCGCCGCAGGGTGGTT CTGATTTATTTTACCAACATGGTCCTCGTCCTAACTTTCAAAACCAGATGAGTCCTGGAATGATGCATGGGCATCCACCCAATATCCATCCTGGTGGACA AAAAATGGGACACGAGGACAATTTACGTGGTCGACCTGGGAATGAATATCACTATAATTCTAGCAAGGAGATGCCGACAATGGGTCGTCATCAGCCAGAT ATGGCACAAATACCCGTTTCAGGAGGCCAGAAGGATATAATGCCTGGGGGAAGTGGAATTGCCAGGAATTCTATGCAAAACATGTTCACTCCTCCAACGG GACCTCCATCTTTTTCAAGTAATGCTTCGATAAGGCCTCCTTATATTGGATCTTCAGATGCCTCGGGTCTCTCACAAGCTGAACTTTACTGCCAGCAACA TGAAGTTACAGCAACAGGAGACAACATTCCACCCCCTTTTATGTCATTTGATGCCGCTGGGTTTCCTCCGGAGTTATTGAGGGAGGTAAGTCTATTCTTT CCTGTTATATGGTATTGCATGATTTGGTACTTCCTAGGAAAGTAATGGTTTTATTCCTCCCCCCTTCTTTTAACTTAAACATTACTTTTAAACTTATATT TTCTCGCTTGTCGCAGGTGCGATATCTGCTCCAGAGCAGGAGCATATGTCGTACGCTGCACTGCTAATCTGCTATTGGCACACTTACACGTGCAACTACT ATTCCGATTTTTGGAGCCTGCTAAACGGATGTTTGGAACCTTTCTTGAGCATCTTCTATAAGGGTGGATGGCCCTTCATTCAAATTTCACCTCATGTGAC GTGGGATTTGTTGATTGATATTGGCTCCGCCTCTTATGTCTTTTTTGCCTTTTTTAATTGCCTCAAGTTGCTTCAGTAAGCAACCAAAACCCGTGTCCTT TTGTTCATTGTCTGCTAAATTATTGGCACTGTTGAATGTAGTTTTGTGTTTCCTAAATCAATTGACATTGGATGTCTTAACTGTTCATTGGCCTGATTGC CTGCCATATGCTCTCATTTCAGATATATTCTGCTGGCTTCTCCAATCCTACGCCAATTCAGGCTCAAACATGGCCCGTTGCACTACAGGGTAGAGACATA GTGGCAATTGCCAAAACAGGCTCTGGGAAAACATTGGGCTATATAATTCCTGCCTTCCTTCTTCTTAAACAGCGGCATAATAATGCCCTAAATGGCCCTA CTGTTCTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGACGAGGTCCTTAAATTTTGCCGTTCTTCACGGGTCTCTTGCACGTGCTTGTA TGGTGGAGCACCTAAAGCTCTCCAGCTAAAAGAACTAGATCGGGGAGTAGACATTGTTGTTGCCACACCTGGGCGCCTCAATGATATACTTGAAATGAAG AAAATTGACTTCAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGGATGCTTGATATGGGGTTTGAACCTCAAATTCGTAAGATTGTGAATGAGA TTCCTCCACACAGACAAACTCTAATGTATACAGCAACCTGGCCAAAAGAAGTAAGGAAAATTGCCAGTGATTTGCTTGTTAATCCTGTCCAGGTTAACAT TGGAAGTGTAGATGAGCTTGCTGCAAATAAATCTATCACCCAGTATGTTGAAGTTGTATCACAAATGGAGAAACAGAGGCGTTTGGAGGAGATCCTCAGT CAGCAAGAACGAGGTTCTAAGATTATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTGGTATTGGCCGTAGTTTTGGGGCTGCTGCAA TTCATGGAGACAAGTCTCAAGGTGAGAGAGACTATGTCTTAAATCAATTCCGATCTGGGAAGTCACCAATTTTGGTTGCCACTGATGTTGCTGCTCGTGG GCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCAATGGAGTTGAGGACTATGTACACCGTATCGGAAGAACTGGAAGGGCAGGTGCT ACTGGAGTGGCATATACCTTTTTCTCTGAGCAGGATTGGAAGCATGCTGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCACAAT TGAGAGATATAGCTTCGCGTGGGCCGCCCAACTATGCAAAGGATCGGGGTGGAATGAATCGCTTTGATTCTGGTGGTCGTGTTGGTGGGCGCTGGGAGGC TGGTGGTCGTGGTGGGATGAGAGATGGTGGCTCTGGTGGTCGTGGTGGGATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGAGATGATGGCTTT GGTGGTCGTGGTGGCATGGGTGATGGTGGGGGGTTTGGTGGTCCTCCTGGTGGCATGAGGGACAGTGGGTTTGGTGGTCATCCTGGTGGCATGAGGGAAG GTGGGTTTGGTGGTCGCGGTGGCATGAGGGATGGAGCTGGTGGGCGAGGCGATTTCTTTTCTGGTAGGGGCAACAGAGGTAGGGGATTTGATGGCCCTCG TGGAGGTAATGTTGGTTGGGGTCGGGGTGAACAGGGTCCGAATGACCGTTACAGCATGGATGGGCGTGGACGAGGGCGTGGGCGTGGACGATTTGACAAT AGAAGAGACGCTGGTTTCAGAAACAGAGGCCGGAGTACTAGTCGTAGTCCTGAAAGAGTTCGGACATGGGATGCTAGCAGCAGAAGCCGCAGTAGAAGCC GCAGTAGAAGTAGAAGCTGGAGTCGGGGTCGCAGCCGCAGCTACAGCCGTAGCATTAGCCCGCGTAGGAGCCGTAGCCGCAGCCGTGGTCGTAGAAGTTA CAGCCGCAGCCATAGTCGTGGCCGTAGAAGTTACAGCCGCAGCCGTAGCCCGGCTGTCAATGTCAGGCGCAATAGGCCAAGTAAGTTCTCTGATACGGCA CCAGAAGTAGGAGCTGCTGATCCTATAATATTGGGAGCTGAACATGTGGAGCAGGTACCTGTTGCTGGGAGTACAGGCCCAGATAATCCAGAAGCTGTAG GAGACCTTCCTCATCAATCAGGTTCTGGTGTTTGAAGCTGCTATGCAAATCTCAATTTTGAAAAGGGCATTGACTTTTTATCCATTGAGTGGTGACTATG TTAACCTCTCACTTTTGTTATGATTGGTTTTACATGGTGATATTGATTACCTTATCACAAAAAGAGTGTTATTATTATGATATATTGCTGCTTTGTTGAA AGAGTTGATGTTTGGTTTAACAGTAGTCAGACTTAGTTCATTCTATCAATTTGTGGTGATTCATTTGCTTGTCAGGCACAGCTAGGGGAACAAGCAAATG TGACATTTTGTTGTTTTAATGTGGTTGTGTTGTTGAATTGGGATAAACAATTATGTTGAGTTGTTTTATCAATTATTCTTTGGTGTTTAATAGGTAAGAA AACTATGTAAGCAGAGATGATATATGAGTTTTATACACTATCATTGTATCATTCATATTAAATTGTCATTAATTTTTTCAGAAAAAGTAATCCAAATGAA TGTTATATGAAA
• Tissue: pods
• Gene name: LI_gene_170780;
• Additional information: details;

Expression of Ll_transcript_416368

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.2
• PS2: 0.1
• PS3: 0.4
• PW1: 0.1
• PW2: 0
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_416368

• Blastp: DEAD-box ATP-dependent RNA helicase 40 from Arabidopsis with 82.21% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 40 from Arabidopsis with 83.03% of identity
• Eggnog: purine NTP-dependent helicase activity(COG0513)
• Kegg: Link to kegg annotations (AT3G06480)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425567.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;