Ll_transcript_416378

• Id Trinity: TRINITY_DN49610_c0_g2_i20
• Name Transcript: Ll_transcript_416378
• Sequence: CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACATTCTTCTTTGCATCAAAAGAGACAACATAAATGAATTAAC ACCCAACATCTTCACTCCTTATTCTTCTTTCTATTAAGACCAACACTTTCAATTCAAACCACCCCTTTTACTTTCTCCCTCGCATAAGATAGATATTAGA AAGATGGCATCAGCAGAAGCAGCTTCTGATGGGGCTGGTCCGAGATATGCACCTGATGATCCTACTCTTCCACAGCCATGGAAGGGTTTGATCGATGGTA GCACCGGTGTGATGTACTACTGGAATCCTGAAACCAATGATACTCAGTATGAAAGACCAGCTCCTTTGGCCCCACCTGTGCCTTCGGGGCCCACACCCGG GGCGTCTACGCCGAGCTTGGCGCCCATACCGGGTGCTCACATGGTACAACCTAGTGGGGTGGTCGCACAGAATGGGCAAGCGCACTTGTCACAACAACTG CAGGGGAGTCATCTCGGCCAACAATATGGGCAACCGATGCTGCAGCACCAGCCTTCTCAGGCTGGCCAATCTGCACAGCAGCAGAATTCTCAGATGTCAC AGTCTGCGCCACAGCCGGGATATCAAGCCAGACCACATTTGATGCATGCTCAAGGACAACAAATGCATTATCAGATGCCGTCGCCGCATTCCCAGCATTA TGGGCAAGGACCACCTCAGGATCATAGCTCGCTTAACATGCAACCACAAGCACCTCAATTCACTCCCCAGAACATGCAGTATATGTCATATCAGCAAAAC ATGATTCAATCTGGGCAACCGAATTCCCTGCCGATGCAGCCGAACATGAATACCTCTGGGCAACCTAACTCCCAGCACATTCAGCATCATATCATGCATG GTCAGCCCCCTTTTGAAAGTCAACAAGATTATAAAGCAGCTTATCCAAAGACAGAGGAAACGGAGTTTAAAAATGGAAGCCAAACTGGACATTCACCATC CCAGTATCAACAAAGAAGTGGTTTGCCTGTTCAAAACAATCAGAGTGTTCCTGCTGATATCACTTCTCATCAATTGCCAAACATAGGTGTTAATGCTGGC CACCCACAACAGTTCAGGGGTTTATCAGGAAACATGCATCAGTCTCCCTCGGCACTGCAGTCGCCGCAGGGTGGTTCTGATTTATTTTACCAACATGGTC CTCGTCCTAACTTTCAAAACCAGATGAGTCCTGGAATGATGCATGGGCATCCACCCAATATCCATCCTGGTGGACAAAAAATGGGACACGAGGACAATTT ACGTGGTCGACCTGGGAATGAATATCACTATAATTCTAGCAAGGAGATGCCGACAATGGGTCGTCATCAGCCAGATATGGCACAAATACCCGTTTCAGGA GGCCAGAAGGATATAATGCCTGGGGGAAGTGGAATTGCCAGGAATTCTATGCAAAACATGTTCACTCCTCCAACGGGACCTCCATCTTTTTCAAGTAATG CTTCGATAAGGCCTCCTTATATTGGATCTTCAGATGCCTCGGGTCTCTCACAAGCTGAACTTTACTGCCAGCAACATGAAGTTACAGCAACAGGAGACAA CATTCCACCCCCTTTTATGTCATTTGATGCCGCTGGGTTTCCTCCGGAGTTATTGAGGGAGGTAAGTCTATTCTTTCCTGTTATATGGTATTGCATGATT TGGTACTTCCTAGGAAAGTAATGGTTTTATTCCTCCCCCCTTCTTTTAACTTAAACATTACTTTTAAACTTATATTTTCTCGCTTGTCGCAGGTGCGATA TCTGCTCCAGAGCAGGAGCATATGTCGTACGCTGCACTGCTAATCTGCTATTGGCACACTTACACGTGCAACTACTATTCCGATTTTTGGAGCCTGCTAA ACGGATGTTTGGAACCTTTCTTGAGCATCTTCTATAAGGGTGGATGGCCCTTCATTCAAATTTCACCTCATGTGACGTGGGATTTGTTGATTGATATTGG CTCCGCCTCTTATGTCTTTTTTGCCTTTTTTAATTGCCTCAAGTTGCTTCAGTAAGCAACCAAAACCCGTGTCCTTTTGTTCATTGTCTGCTAAATTATT GGCACTGTTGAATGTAGTTTTGTGTTTCCTAAATCAATTGACATTGGATGTCTTAACTGTTCATTGGCCTGATTGCCTGCCATATGCTCTCATTTCAGAT ATATTCTGCTGGCTTCTCCAATCCTACGCCAATTCAGGCTCAAACATGGCCCGTTGCACTACAGGGTAGAGACATAGTGGCAATTGCCAAAACAGGCTCT GGGAAAACATTGGGCTATATAATTCCTGCCTTCCTTCTTCTTAAACAGCGGCATAATAATGCCCTAAATGGCCCTACTGTTCTGGTTTTGGCTCCAACAC GTGAACTTGCAACACAGATCCAAGACGAGGTCCTTAAATTTTGCCGTTCTTCACGGGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCTCTCCA GCTAAAAGAACTAGATCGGGGAGTAGACATTGTTGTTGCCACACCTGGGCGCCTCAATGATATACTTGAAATGAAGAAAATTGACTTCAGGCAAGTTTCA CTCCTTGTGCTTGATGAGGCTGACCGGATGCTTGATATGGGGTTTGAACCTCAAATTCGTAAGATTGTGAATGAGATTCCTCCACACAGACAAACTCTAA TGTATACAGCAACCTGGCCAAAAGAAGTAAGGAAAATTGCCAGTGATTTGCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTAGATGAGCTTGCTGC AAATAAATCTATCACCCAGTATGTTGAAGTTGTATCACAAATGGAGAAACAGAGGCGTTTGGAGGAGATCCTCAGTCAGCAAGAACGAGGTTCTAAGATT ATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTGGTATTGGCCGTAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTG AGAGAGACTATGTCTTAAATCAATTCCGATCTGGGAAGTCACCAATTTTGGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATTAAGGATATAAGGGT GGTGATCAACTATGATTTCCCCAATGGAGTTGAGGACTATGTACACCGTATCGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTGGCATATACCTTTTTC TCTGAGCAGGATTGGAAGCATGCTGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCACAATTGAGAGATATAGCTTCGCGTGGGC CGCCCAACTATGCAAAGGATCGGGGTGGAATGAATCGCTTTGATTCTGGTGGTCGTGTTGGTGGGCGCTGGGAGGCTGGTGGTCGTGGTGGGATGAGAGA TGGTGGCTCTGGTGGTCGTGGTGGGATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGAGATGATGGCTTTGGTGGTCGTGGTGGCATGGGTGAT GGTGGGGGGTTTGGTGGTCCTCCTGGTGGCATGAGGGACAGTGGGTTTGGTGGTCATCCTGGTGGCATGAGGGAAGGTGGGTTTGGTGGTCGCGGTGGCA TGAGGGATGGAGCTGGTGGGCGAGGCGATTTCTTTTCTGGTAGGGGCAACAGAGGTAGGGGATTTGATGGCCCTCGTGGAGGTAATGTTGGTTGGGGTCG GGGTGAACAGGGTCCGAATGACCGTTACAGCATGGATGGGCGTGGACGAGGGCGTGGGCGTGGACGATTTGACAATAGAAGAGACGCTGGTTTCAGAAAC AGAGGCCGGAGTACTAGTCGTAGTCCTGAAAGAGTTCGGACATGGGATGCTAGCAGCAGAAGCCGCAGTAGAAGCCGCAGTAGAAGTAGAAGCTGGAGTC GGGGTCGCAGCCGCAGCTACAGCCGTAGCATTAGCCCGCGTAGGAGCCGTAGCCGCAGCCGTGGTCGTAGAAGTTACAGCCGCAGCCATAGTCGTGGCCG TAGAAGTTACAGCCGCAGCCGTAGCCCGGCTGTCAATGTCAGGCGCAATAGGCCAAGTAAGTTCTCTGATACGGCACCAGAAGTAGGAGCTGCTGATCCT ATAATATTGGGAGCTGAACATGTGGAGCAGGTACCTGTTGCTGGGAGTACAGGCCCAGATAATCCAGAAGCTGTAGGAGACCTTCCTCATCAATCAGGTT CTGGTGTTTGAAGCTGCTATGCAAATCTCAATTTTGAAAAGGGCATTGACTTTTTATCCATTGAGTGGTGACTATGTTAACCTCTCACTTTTGTTATGAT TGGTTTTACATGGTGATATTGATTACCTTATCACAAAAAGAGTGTTATTATTATGATATATTGCTGCTTTGTTGAAAGAGTTAATGTTTGGTTTAACAAT AGTCAGACTTAGTTCATTCCATCAATTTGTGGTGATTCATTTCTTTTATAATGTACTTGTGTTGTTGAATTGGGATAAACAATTATGTTGGCTTCTTTTA TCAATTATTTTAGTAGGTAGATTAGATTTGTTTAATAAAAA
• Tissue: pods
• Gene name: LI_gene_170780;
• Additional information: details;

Expression of Ll_transcript_416378

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.1
• PS3: 0.2
• PW1: 0.1
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_416378

• Blastp: DEAD-box ATP-dependent RNA helicase 40 from Arabidopsis with 82.21% of identity
• Blastx: DEAD-box ATP-dependent RNA helicase 40 from Arabidopsis with 83.03% of identity
• Eggnog: purine NTP-dependent helicase activity(COG0513)
• Kegg: Link to kegg annotations (AT3G06480)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425567.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;