| Id Trinity | TRINITY_DN49612_c0_g1_i15 |
|---|---|
| Name Transcript | Ll_transcript_415178 |
| Sequence | ACCACGTGGAATCAAAAATTTCTTAGGTCAAATTTGAGGCGCCATGTATGGAATGATGACTATTAGCATCAATTTTCCTCTGACTCAGATACCAAAAATG AAAACATGGATTACCAATTCAAAATCAAATAATAAAAAGTTTTGGCCGTCACACATATTCCACAACCATAAAGGTAAGCACCCAAACACGGTCCTAAACA TTTCGCATTACCCTAATATAGGACTTTTCATTCCTTCGCCGCATGTTCCCCTTTCTTTCAATTTCTCACTCTATTTGAACTAATACCACTGTGCTGTGTT CTGCTCCTGATATAAACCCTATGGCGCTTCGTTTTGAGGTTCACCTTCCAATTATATTTCTACTCAGCCACATTGTCTCTTGTCTTTTTGTTATGCTTGA ATATTTAACTGCTTCGCTGTTCTTTTTTGTTTTCTTTGAATAATTTAATTAATAGGAATCTGTTTATCAATTTTTGATTTTGTTCAAGTGACAAGGGTTT TTGTTTCCCTAAGTGAGTGTTGTGAATGAAAAAATATACATTTTTATTATAAATTTAAATGGAGAGAGTTGTATATTTGTATGACTTTTTTTATATAAAA AAACACTTAATTTTGTAAAAATATATTCCTCCTTTTTTCATTCCAAAAAACCACTTCCTGCGATTTAATTTTTGGAGGGGAGTGAGAAAATGTCTGAAAT TTTGGATGATTCTATATACAATAGCTATGAAGCTCCCATACTGATACGAGTATGGGATATGATATGTGTCCAATATGTGTATACATATATTATTGAAAAT GCAGACATGTTTGAGATACACATATATGCACATTAAAAGTTTATAGAACTGATTAGTGCCCATAAATAAGAATAGCATTGATACCATTTAATCCGTGATC AACGTTATGTAAATGCAACTTCTCTTCTTTCTCTGTACAAATATACATGCTTTGTCTTTTTTCTCTCACTACAAGTCCACTTTTGTACATTGAACGTTAT TTTCCCTTCTACTTAATTGATTATGTTTTATGTTTTTTTCCTCTTTCCCCCTCTTAAGATACGTACCAGAGAGTATATGAAAAGTATTGGATTTATGATT TATTTAATTTTGAAAAAAATAATTTCGATACACTATGGATACGTATCAATGAAGAAGCAGAGAGATACATGAAAGATTGAAGTATCAATGTTTTCATGAT GCAATAGAATAAGAGATAGACATGTGATTGCTGAAAAGCATTGTGTGCGCATGATCTTTTGGCATTTTTTATTTATTTCATAACTGTATTTCAGTTATTC TTTGAACTCCACTCTGTTCCCGTTGTCAGGTTCTTGCCAGGTTCAACCGAGCTCGTGCAGCTCGATTGACACTCCCTCACTTTGTGTGTGAAACGCCTTT ATTTATGCCAGTAGGCACACAAGGGACTATAAAAGGATTGACTAATAGCCAGCTTGAGGATATTGGCTGCCAAATAATTCTTGGAAATACTTATCACTTG GCCCTTCGACCTACTTCGGAGCTTCTTGCGGAAGCTGGCGGTCTTCACAAATTTATGAACTGGCGGAGGGCAATGCTTACAGACTCTGGTGGCTTTCAAA TGGTCTCACTGTTACATCTTGCTGATATCACAGAAAAAGGTGTGACATTTCAGTCACCAGTGGATGGAAAGCCGATGCTTTTAACACCCGAGGAATCAAT TCAGATCCAAAATAGAATTGGGGCAGATATCATTATGGCTCTTGATGATGTTGTAAAGACCACCATCACTGGTCCAAGAATTGAGGAAGCTATGTATCGA ACACTTAGATGGATTGACAGATGTATAGAAGCTCATGGGAGGCCTCATGATCAGAACTTGTTTGGTATTGTACAGGGTGGTTTGGATCCCGTGTTGAGGG ACATTTGTATCAAAGGCTTGGTGGATCGCAATTTGCCTGGCTATGCTATTGGTGGTCTTGCAGGTGGCGAAGATAAGGATTCATTTTGGCGTGTTGTAGC TCAGTGCACTGGTTCTTTGCCAGAGGATAAACCGAGATATGTTATGGGAGTTGGCTATCCACTTGATGTTGTTGTTTGTAGTGCTTTGGGTGCTGACATG TATGATTGTGTTTATCCTACCCGTACAGCACGTTTTGGCACTGCTCTTGTTCCTGAGGGAGTATTAAAACTAAAACAAAGAGCAATGGCTGATGACACCC GTCCAATTGATCCTACATGCCCTTGTATGGTTTGTAAGAACTACAGCAGGGCTTACATCCATTGCCTTGTGACAAAAGATGCTATGGGATCTCAGCTTTT GTCATATCATAATTTATATTACATGATGCAGGTACAAAGACTATCACATAATAGAAGATTTTTTTGTAAATTTATGATCAATATATTCACATGTATGATT GAGTCGGTGTCCTTTTAAATTTTGCAGCTTAGTAGGGATCTACACTCATCAATAGTCGAGGGGAGGTTCCCAAAGTATGTTTACCTTTATATTTAAATTT TGTGTTTTCATCTAATTTCTTATGGGGTGCATCAGTCTTTTTTGTTGAACAATTTGTCTTTGTATATTTCACTTACCTGTTTTAATTTTTGTTGTTGCAG GTTTGTGTGTGACTTTCTAAGCAAAATGGTATTAAGTACTGAAAATTGCCCATTCATTGTTTGTTCTTCAGTTGATTTACATATTTATTTTGAGTAAATT ATATCAACCTTCATTGAATTTTGAGCTCAATACGTTGTTTCCTGGTTTTACCTTTTCTTTTATTCTTCTGAAATCTGAAACTAGAAACTATTTTATATTT TTACAGACATTGTGATCTTTTGGATTCG BLAST |
| Tissue | pods |
| Gene name | LI_gene_170792; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415178
| Blastp | Queuine tRNA-ribosyltransferase catalytic subunit 1 from Silurana with 60.26% of identity |
|---|---|
| Blastx | Queuine tRNA-ribosyltransferase catalytic subunit 1 from Xenopus with 53.46% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (394694) |
| CantataDB | Link to cantataDB annotations (CNT0000446) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019416066.1) |
| Pfam | Queuine tRNA-ribosyltransferase (PF01702.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |