| Id Trinity | TRINITY_DN49612_c0_g1_i16 |
|---|---|
| Name Transcript | Ll_transcript_415179 |
| Sequence | ACCACGTGGAATCAAAAATTTCTTAGGTCAAATTTGAGGCGCCATGTATGGAATGATGACTATTAGCATCAATTTTCCTCTGACTCAGATACCAAAAATG AAAACATGGATTACCAATTCAAAATCAAATAATAAAAAGTTTTGGCCGTCACACATATTCCACAACCATAAAGGAACTAATACCACTGTGCTGTGTTCTG CTCCTGATATAAACCCTATGGCGCTTCGTTTTGAGGTTCACCTTCCAATTATATTTCTACTCAGCCACATTGTCTCTTGTCTTTTTGTTATGCTTGAATA TTTAACTGCTTCGCTGTTCTTTTTTGTTTTCTTTGAATAATTTAATTAATAGGAATCTGTTTATCAATTTTTGATTTTGTTCAAGTGACAAGGGTTTTTG TTTCCCTAAGTGAGTGTTGTGAATGAAAAAATATACATTTTTATTATAAATTTAAATGGAGAGAGTTGTATATTTGTATGACTTTTTTTATATAAAAAAA CACTTAATTTTGTAAAAATATATTCCTCCTTTTTTCATTCCAAAAAACCACTTCCTGCGATTTAATTTTTGGAGGGGAGTGAGAAAATGTCTGAAATTTT GGATGATTCTATATACAATAGCTATGAAGCTCCCATACTGATACGAGTATGGGATATGATATGTGTCCAATATGTGTATACATATATTATTGAAAATGCA GACATGTTTGAGATACACATATATGCACATTAAAAGTTTATAGAACTGATTAGTGCCCATAAATAAGAATAGCATTGATACCATTTAATCAGTGATCAAC ATTATGTAAATGCAGCTTCTCTTCTCTCTCTATACAATATACATGTTTTGTCTTTTCTCTCTCACTACAAGTCCACTTTTGTACATTGAACGTTATTTTC CCTTCTACTTAATTGATTGTGTTTTATGTTTTTTTCTCTTTCTCTTCCCCCCTCTTAAAATGCTCCCGAATGATAGTTCCAATGTCTGGGAGGCATCACA AAGATACGTATCAGAGAGTATATGAAAAGTATTGGATTTATGATTTATTTAATTTTGAAAAAAATAATTTCGATACACTATGGATATGTATCAACGAAGA TGCAGAGAGATACGTGAAAGATATTGAAGTATCAATTTTTCATAATGCAATAGAATAAGAGATAGACATGTGATTGCTGAAAAGCATTGTGTGCGCATGA TCTTTTGGCATTTTTTATTTATTTCATAACTGTATTTCAGTTATTCTTTGAACTCCACTCTGTTCCCGTTGTCAGGTTCTTGCCAGGTTCAACCGAGCTC GTGCAGCTCGATTGACACTCCCTCACTTTGTGTGTGAAACGCCTTTATTTATGCCAGTAGGCACACAAGGGACTATAAAAGGATTGACTAATAGCCAGCT TGAGGATATTGGCTGCCAAATAATTCTTGGAAATACTTATCACTTGGCCCTTCGACCTACTTCGGAGCTTCTTGCGGAAGCTGGCGGTCTTCACAAATTT ATGAACTGGCGGAGGGCAATGCTTACAGACTCTGGTGGCTTTCAAATGGTCTCACTGTTACATCTTGCTGATATCACAGAAAAAGGTGTGACATTTCAGT CACCAGTGGATGGAAAGCCGATGCTTTTAACACCCGAGGAATCAATTCAGATCCAAAATAGAATTGGGGCAGATATCATTATGGCTCTTGATGATGTTGT AAAGACCACCATCACTGGTCCAAGAATTGAGGAAGCTATGTATCGAACACTTAGATGGATTGACAGATGTATAGAAGCTCATGGGAGGCCTCATGATCAG AACTTGTTTGGTATTGTACAGGGTGGTTTGGATCCTGTGTTGAGGGACATTTGTATCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_170792; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415179
| Blastp | Queuine tRNA-ribosyltransferase catalytic subunit 1 from Danio with 65.09% of identity |
|---|---|
| Blastx | Queuine tRNA-ribosyltransferase catalytic subunit 1 from Danio with 64.84% of identity |
| Eggnog | Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (By similarity)(COG0343) |
| Kegg | Link to kegg annotations (393985) |
| CantataDB | Link to cantataDB annotations (CNT0000446) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019416068.1) |
| Pfam | Queuine tRNA-ribosyltransferase (PF01702.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |