Id Trinity | TRINITY_DN49612_c0_g1_i3 |
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Name Transcript | Ll_transcript_415166 |
Sequence | ACCACGTGGAATCAAAAATTTCTTAGGTCAAATTTGAGGCGCCATGTATGGAATGATGACTATTAGCATCAATTTTCCTCTGACTCAGATACCAAAAATG AAAACATGGATTACCAATTCAAAATCAAATAATAAAAAGTTTTGGCCGTCACACATATTCCACAACCATAAAGGTAAGCACCCAAACACGGTCCTAAACA TTTCGCATTACCCTAATATAGGACTTTTCATTCCTTCGCCGCATGTTCCCCTTTCTTTCAATTTCTCACTCTATTTGAACTAATACCACTGTGCTGTGTT CTGCTCCTGATATAAACCCTATGGCGCTTCGTTTTGAGGTTCACCTTCCAATTATATTTCTACTCAGCCACATTGTCTCTTGTCTTTTTGTTATGCTTGA ATATTTAACTGCTTCGCTGTTCTTTTTTGTTTTCTTTGAATAATTTAATTAATAGGAATCTGTTTATCAATTTTTGATTTTGTTCAAGTGACAAGGGTTT TTGTTTCCCTAAGTGAGTGTTGTGAATGAAAAAATATACATTTTTATTATAAATTTAAATGGAGAGAGTTGTATATTTGTATGACTTTTTTTATATAAAA AAACACTTAATTTTGTAAAAATATATTCCTCCTTTTTTCATTCCAAAAAACCACTTCCTGCGATTTAATTTTTGGAGGGGAGTGAGAAAATGTCTGAAAT TTTGGATGATTCTATATACAATAGCTATGAAGCTCCCATACTGATACGAGTATGGGATATGATATGTGTCCAATATGTGTATACATATATTATTGAAAAT GCAGACATGTTTGAGATACACATATATGCACATTAAAAGTTTATAGAACTGATTAGTGCCCATAAATAAGAATAGCATTGATACCATTTAATCCGTGATC AACGTTATGTAAATGCAACTTCTCTTCTTTCTCTGTACAAATATACATGCTTTGTCTTTTTTCTCTCACTACAAGTCCACTTTTGTACATTGAACGTTAT TTTCCCTTCTACTTAATTGATTATGTTTTATGTTTTTTTCCTCTTTCCCCCTCTTAAGATACGTACCAGAGAGTATATGAAAAGTATTGGATTTATGATT TATTTAATTTTGAAAAAAATAATTTCGATACACTATGGATACGTATCAATGAAGAAGCAGAGAGATACATGAAAGATTGAAGTATCAATGTTTTCATGAT GCAATAGAATAAGAGATAGACATGTGATTGCTGAAAAGCATTGTGTGCGCATGATCTTTTGGCATTTTTTATTTATTTCATAACTGTATTTCAGTTATTC TTTGAACTCCACTCTGTTCCCGTTGTCAGGTTCTTGCCAGGTTCAACCGAGCTCGTGCAGCTCGATTGACACTCCCTCACTTTGTGTGTGAAACGCCTTT ATTTATGCCAGTAGGCACACAAGGTTAGAGCTTTAAAATTAATTCTTCCTGATATTATAGCAAATGCAACTTCCTTTGGCATCAAGCTTATGGATTTGGA GAGATTATACACCTCTTATTTCATTAGAGAAGATAATAGAAGATATCCTTTTTGAAGTGAATTATTTATCCTATGGATTTTGGTTATTGCTTGTCCATAG AATACTCATTTCTTGATATTTGAATTGGTTGATATGGCTTTCTCCATTTGGTAGGCATCTAGCTGATTAATGGTTTGCTTAATAGATGTATTGTACCTTT GCCTTGCTAATGGGGTTCATAAATGATCAGGGACTATAAAAGGATTGACTAATAGCCAGCTTGAGGATATTGGCTGCCAAATAATTCTTGGAAATACTTA TCACTTGGCCCTTCGACCTACTTCGGAGCTTCTTGCGGAAGCTGGCGGTCTTCACAAATTTATGAACTGGCGGAGGGCAATGCTTACAGACTCTGGTGGC TTTCAAATGGTCTCACTGTTACATCTTGCTGATATCACAGAAAAAGGTGTGACATTTCAGTCACCAGTGGATGGAAAGCCGATGCTTTTAACACCCGAGG AATCAATTCAGATCCAAAATAGAATTGGGGCAGATATCATTATGGCTCTTGATGATGTTGTAAAGACCACCATCACTGGTCCAAGAATTGAGGAAGCTAT GTATCGAACACTTAGATGGATTGACAGATGTATAGAAGCTCATGGGAGGCCTCATGATCAGAACTTGTTTGGTATTGTACAGGGTGGTTTGGATCCCGTG TTGAGGGACATTTGTATCAAAGGCTTGGTGGATCGCAATTTGCCTGGCTATGCTATTGGTGGTCTTGCAGGTGGCGAAGATAAGGATTCATTTTGGCGTG TTGTAGCTCAGTGCACTGGTTCTTTGCCAGAGGATAAACCGAGATATGTTATGGGAGTTGGCTATCCACTTGATGTTGTTGTTTGTAGTGCTTTGGGTGC TGACATGTATGATTGTGTTTATCCTACCCGTACAGCACGTTTTGGCACTGCTCTTGTTCCTGAGGGAGTATTAAAACTAAAACAAAGAGCAATGGCTGAT GACACCCGTCCAATTGATCCTACATGCCCTTGTATGGTTTGTAAGAACTACAGCAGGGCTTACATCCATTGCCTTGTGACAAAAGATGCTATGGGATCTC AGCTTTTGTCATATCATAATTTATATTACATGATGCAGCTTAGTAGGGATCTACACTCATCAATAGTCGAGGGGAGGTTCCCAAAGTTTGTGTGTGACTT TCTAAGCAAAATGTTCCCAGAAGGCAATGTTCCTGAATGGGTCTGTAACGCTATGGAGGTAGCTGGAATCGACATTTCTTCCTGCTGCACCTTTTCTGAA AGGGTCTGCAATGCTAAGGTGGCTGGAATCGACATTTCTTCGGACTGCACTCTGTCTTCATCATGCGGAGAACATGATTCTGATAATGTGTCAGATAAAT ATGATGAGTTAAAATTGAAGTTGGAGAGATTAAGAAACAATGAAGATGCATTGAGGAGATAATATAATTTAGTTTAGATTATGATTCTTGCAGCATAAAT TTTGTAACCTAGTTATGCTGCTTCAGTAAAAGTTATGAAAGTTATTAGAACTTTTTTGGTTCCTTCCATTTTGGCTTTTTATTAGGCACATTCAAGATTA ATTTTGTATCATATAGCAGTGTAAAAGATGGGTAGGTAAGTAGAATCTTGATTCTGGCTGTGTTCCTATAGAGAACAATTGATGAAACGTTTTTACTGAT AGTGAAGCTGGAATGTAACTCTTACATTCACAAGTTTGCACAATTTTATTATGATTACATATTTGTTCAGGCCATTCTATGTAGAGCACTGATATTAATT TATTTTAGACGTCACTGCTATGGAACAGAGGTGAAATGATGTGAATGATATAATCTACAAT BLAST |
Tissue | pods |
Gene name | LI_gene_170792; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415166
Blastp | Queuine tRNA-ribosyltransferase catalytic subunit 1 from Xenopus with 56.35% of identity |
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Blastx | Queuine tRNA-ribosyltransferase catalytic subunit 1 from Silurana with 56.82% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (734584) |
CantataDB | Link to cantataDB annotations (CNT0000446) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019416068.1) |
Pfam | Queuine tRNA-ribosyltransferase (PF01702.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |