Id Trinity | TRINITY_DN49615_c1_g2_i11 |
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Name Transcript | Ll_transcript_416722 |
Sequence | GTAAAAACTAAACTACCCCGCCGTACTTCCCTTCCTTCAACAACCACTTTTCTGAATTCCCAATCTTCTCAATCAATTTCATTTCATGGAACCCTCATCT CAATCTGAATCTCAATCTCATCCACCACAATCCATGGATTCCCCTCTCTGGGATCTCACTGAACTCCTCAACTTCAACCTCGACGACATTCAAATCTCTC CCTCCGTTGACCACCACGATCCCCTCCTTCCTCCGTCGCCGGATATTCTCAAAATTCGCAAGCGAGACCCGAGGCTCACGTGCTCCAATTTCCTCGCCGG TCACGTGCCTTGCGCGTGCCCCGAGCTCGATGCTAAGCTCGATGATGAAGGTTTACCTGGTAAGAAACGTGTCAGAACCGCACGTGCTTCCGTTGGGATC GTACGGTGTCAGGTTCCGACGTGTGAGGTTGATATTTCGGAGCTTAAGGGTTATCATAAGAGGCATAGGGTTTGTTTGAGTTGTGCAAGTGCTGCTACTG TTCTCCTTCATGGGGATGAGCCTAATAGATATTGTCAACAGTGTGGAAAGTTTCACATATTATCGGATTTTGATGAAGGTAAACGCAGCTGTAGAAGAAA ATTAGAGCGCCATAACAAACGAAGGCGAAGAAAGCCTACAGATTCTGAAGTTGCTGCTGGTCATGAACTTGAACATGCCACACAGAATGAGGATTTTAGT TACGACGGGGAAGCAGGGAAAGATTGTTCAAATTCTAGTGGTGAGATAAATGAGAAAGAAGTGTCACCAGATCATGAAGATGAACCACTTGCTATTCTGC GCTCAGCTCCTGATACCAAGAATGTTAATAGTGATGATGTTCCATCTCATGTTGCTTCCAGTGAAACACAAGTGAATAGTGGGAAAGATGTTTCCAACAT TTTTAATACACCTTCATATTGTGACAATAAGAGTGCTTATTCATCTATGTGCCAAACAGCTCGGATATCTTTTAAGCTTTATGATTGGAATCCTGCAGAA TTTCCTAGAAGGCTACGACACCAAGTATTTTAAATCACTGTTATTACCACCGTTAAGTATTTAAATAGTGGCTAGATAATCTGCCTTCTGGATGTCCAGA ACTGATTAACAAGTAGTCAAATGCATTTGTAGATATTCCAATGGTTGGCGAGTATGCCTTTAGAGCTGGAGGGATATATCCGCCCTGGATGTACGATTCT CACAACTTTTGTTGCAATGCCAAAAACTACTTGGATAAACTTACTCGAAGACCCCCTGCACTATGTGTGTGATCTTGTTGCTCCAGGAAAGATGCTATCT GGAAAAGGTAGCGCACTAGTTCATTTGGATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGATGAAAGTTGAGGTAAACATGCAGGCACCAA GGCTTCACTATGTTCACCCCACATGCTTCGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGT TTCTTTTTCTGGAAAGTATCAGAACTATGAGTATTGTGTTCAATGTCCCCATAACTGGACTGGAGATAATGTTTCTTGTGCTTTCGACAATCAGTTATAC AAGATACATATTCCTCACACAGAGGAAAGTCTCTTTGGGCCAGCATTTATTGAGCTTTAGTAACTTGTGATGCATTATTCACTGTTATGAGTCAAGTCTC CCAAAAGCTTAAGTTGTTAAGTGAAGTCTATTAGATGGTTTTATCTCCAAAATGGTCGCTTACACAAGGGACCTTTGGCCTTGAAGTTTGGACAATGAAC AGGCTCAGCTACCTTATGCTAAAATTCAACTTTTATTTTGAAGAACGGGGGTGCATGCCGGCTGGGATTGAATTCATGACTCCTTGGTTATAGAGGTTTG ATACCATGTCAGAAGCTGACTGTCATAAAAGCTCCAATGTTCTCATTATGGGTTTTATATACATGACATTTACAATTAAAATATGGCATTAAATATGGAA TTAAATCAAATAAAATATTCTAAAATATATTATTAATCAATAGTCGATGATAATAATACAAGTATAAAGAGTATACCGAAAATATCTACTAAGTATACCT ATAACATACCAGTATTTTGACTGGGCAACATACTACATACCCGTACTAAAGAGAACCACGTATCAGGTTACTATGTGCCAAACTATTGTATCATGCTCTT AAAAAATCACTCCCTGGTACTGTAATCAGCTCCATTACCTTCTTGGTTTTTCTATTTGACTGATTCTTATATGAAGTACCTTTAATTTATGCAAGGATGC TCAGAGTAATAGAATTTGGATCTTAAAGTCCAGCACTAGATTGTACAATTGCTGTATTAATCAGACCATATATATGGATATCAGATTTAGATAAATTGAC AGAACCCTTTTATGCAGTAAGATATTGGTAGTTGATGCTTTTAGAAATATGATTAAGTTTCAGTTTTAAATGGTTTACAGAAATATTGAGTACATTTTTT ACATTGTTGTTCTTATGCCCTTTCATATTTCTCTCTGCTGTTTTTAACATATATATTTTCTCTTTCTGTAGGTGGAGAATGAGTCTGGTTTATCAAACTT TATTCCTGTACTCATTGGTGATAAAGGAATTTGCACTGAAATGAAGAGATTACTGCAAAAATTAGACGCGTCTCTCCTTTCCAAACAATTCCACTCTGCA GCTGTTGGTTCTGTCTGCAGCTCATGTCAGGCTTTTGCACTTAGACAGACATCCTCATCAGACTTACTTCTAGATATCGCATGGTTGCTTAAAGACCCTA CTTCAGAAAACTTTGATCGAGTGATGACAGCTTCACAAATTCAAAGATATTGTTATTTGTTGGATTTTCTAATATGCAATGACTCAACAATCATTTTAGA AAAAATATTACCCAATTTGATATTGTTATTTGTTAGTATGGAATCAAATGTGCTGACTAATAAAATGAGTGGTATCGACATGACACATTTGCTGAAATGT GTGCATAATGCTAGAGATGTCATTTATCAGAAACATCACAAAGGTGGAGGTATAATTGTGCAGTCTGAAATGGAAGGCTTTAAAGTTGCTCGGAGCTGCC TCCAAGATGACTTGTCATCGGTTGCAATTAACAGTCAGGGCATCATGTCAATAGCAGATGCAAGGTTGGGAGTATTAACAAGTTCAACTTCTAATGACAG AAATGAAAGGATACCACTTTTAAAGAGGGACATTATAATGAACATGGAAGAATTGCCTAAAACGTCAAGCCATCGATATCTTCCCCGGGGTTTCCTGAGC TCGCGACCAGCTATGTTTGTGATTGCTTCACTTGCTGTATGTTTTGGGTTATGTGTAGCGGTCCTTCATCCTGGGAAGGTTAGTGAGCTTGCAGTATCCA TCAGAAGGTGCTTGTTTAGCAATTCATAGTTGCTTCAATTTTTTGTACCTATTCTGTTGTTGGTATATATTCATTGTAACACTAAATAAACGTATGCTAT TAGGATGAGTAATTAGTTATTACATTAGAAGGTTAATTTATGGTTGCTTCTAATTTGTGCATTAGCATATCAATTTAATTTGATGCCCCTAAAGGGAACA TATGCTAATTTGAATATCTGTAGTGCTAATATTAAATTGAATGCATGCCTTATGCTTCATTTTATACATATCTGGTGCTAAGCCCAGATGAATGATGAAA ATTATGTTAGACAGTCGATAATTAAAATGAATCATTCTCGAAT BLAST |
Tissue | pods |
Gene name | LI_gene_170805; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_416722
Blastp | Squamosa promoter-binding-like protein 7 from Arabidopsis with 50.93% of identity |
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Blastx | Squamosa promoter-binding-like protein 7 from Arabidopsis with 53.19% of identity |
Eggnog | Squamosa promoter-binding-like protein(ENOG4111YFE) |
Kegg | Link to kegg annotations (AT5G18830) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019419596.1) |
Pfam | SBP domain (PF03110.13) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |