| Id Trinity | TRINITY_DN49627_c4_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_415433 |
| Sequence | AATCAATGGTTTTTCAGTAGCCACTACAACACTAGACTCTCTGTTTTCTTTGTTCTATTTCAGTAAGTTTTCTTTTCTTTTCTCCCTCTTTTCTCCCTTC TAATCCAAGTATAGACTTTGCTTTTACTCAAATTTACACTGTGTGATTCTGGAGATTATTTTTCCACCTTATTACAGAAAAGATGCTTTTTGCTGGCTTA TATAATTATCTCATAGCAGAAAACATCTTAGTCTAAAGTTTTGTGCAATGTTCAAAATGTTATGTGTTCCTTCTAACTTCTAAGTAGTGAAATGTATAGT GAATCATTTTTTAAGGGTTTTAGGAAGTGGTATCATAAAACTCTTTCCTTGTTGGTGCAGATTATCTTCATGGCTACCAATTGTGGTGCTTCAAAGAGAA AAGCCTCAGATGAAATAGACTATGTCAATTTTTCAATCAGGGGACAGGATGGGAGTTTGTTATTCTACAAGGTGAACAATGATACCGAGTTCAAACATGT ATTTGAAGATTACTGCAAAAAAAAGAGATTAGAATATGCAACTATACAATTTTTACATGAAGGCCAACGTGTTTTGGGGAGACAAAAGCCCAAAAAGGTT AGTATTGTTCTTTCAAAATTTCAATGAGTCTTTGAAAATCATGATTATTTATTTATGAATTTTGTGTTAAGATTTATTCTAAAACCAATAAAATGAGTAA CCCAGTATGTACCCGTTGGACTAGACAAATTGTTATGTTCGATTCATAATTAAAGAGTGTCTTTTGATCCAAAGATATTGAAGATATTATTGTATATCAT GTTAAAGTTTCATCTAAAAAATTAATTGATAATGAGAAAAGTAAGTTAATATATATTTAGATATTTAAATCATGTCTAAAAAAATGAGTAGAAATGCTTG CTTTCCAAATATATAAGTTTCGGAATAATATGTAGGTAATTATTTGTAACGTGGTAAGCTATTATTGTGTTTGAAAATCACTATAAAGATGATACTTATG AGACAATATATGTAGAAATGAGTCCAAGAAGGAATATTGAGAGAAATTAGAAGTATCTCACTTATATTTTATGTGACTGTCGCCTGTTTCATAACAAATG TTTTTAAATTTTACGGGTATTGGTTTAAGTAGTATATGTTTGATTCTCTTTAAGTAAAGTCTCGGTTTCAAGTTTTGTGCATAAAAAATGTCTGCTGGAA GAGTTAGCCCCACATACCTGTGGAGGTTCCGGACATGATTGCCTCCAGTATGATGATACATGTGTGAAATAAAAAAATATAACTTTTCACTTATACTGTC AAATGTTCATAACTTCGGATATAAAGGTTATATCAGGTGAGAATAATGTGTTTTAAAAATATGATAATAATTAATATGGACCAACTTTATTCTTTTTTGT ATGAGAACTAACTATTTTACTGAAGTGTCGCTCATAGGAATCGAATACTTGACTTTTTAATCTTTGTGAAGATCTTGTAGAGCATGTTATTCCCATATGT ATAAAATTCAGTGTTTCAACTTGGTGTGTATATTAAAACATTACTGCTGTTATTGTATAGATTCATTTTACTAACCTAAAGTCCTATTTTCTATGAATGC AACTTGACTATTGTAGCGCAATTTGGAAGATGGTGCTGAGATCCTAGCCATGAAACAAGTAATGGGAGGTGGTGTTGCAACACTAATCTTTTATTGAATG TTTGATTACTTGAGAGTTTGTTTGTTTAACTGTTATGGTGCATGATAAGAAGAGTAGGTAAGGTTTGTAAATTAATTGAATGCTTCAACTAATACTGTAA TATTGCTTTTTCCATCATGAAAAATGTAAAACATGAATTTATCTTTAATTGTTTTATCAGTATAATTTAATTGTAATGCCACCCCAGAATTCAGTTAGAT AAGTTATTCATGCTAAAGTTTGAATATATGGATTATGAAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_170904; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415433
| Blastp | Small ubiquitin-related modifier 2 from Arabidopsis with 27.54% of identity |
|---|---|
| Blastx | Small ubiquitin-related modifier 2 from Arabidopsis with 27.54% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (AT5G55160) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460654.1) |
| Pfam | Ubiquitin-2 like Rad60 SUMO-like (PF11976.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |