Id Trinity | TRINITY_DN49630_c3_g1_i19 |
---|---|
Name Transcript | Ll_transcript_416203 |
Sequence | GAAAAAATGATAATTCAATATAATTATTAATTATATAAAATTTTACCTTTATATATAATTATATATTTATAGATAATAATTATTAATTATGTATTAAATC ACCCGGTCAGACCAGACGGTCTAACCGGTTGAACCTAATACGGGACCTCTTCTAGTTTGACGTCCGGCTCGGGTTTCACAACATTGGTTTCAATCTCAGT ATCAGAGTTATACTCTCACATTTTATGCATTTTTAAGTAATATTTGAATTATTGTTCTTACAATTCCAGGAAGAAGAAGGAAAAGATGAAACTCATTTCC ACATTGCTACCAGTTGTATTTCTCACTCATTGAAGTCTCAGATCATTAACAGATCCTATGATGAAATTGCCATTTGCTTCTATAACACAAGGGAGAAGAA GAATATACAAGACTTAAATGGTGTTGTTGTATTTAATGTTGCCGAAAGAGAGTTTTTGGACAGGCCAAATGCCAGGCTCATTAAAGAATTTGACTCTATT GAGGAAACTTTTTCTAAAAACATTGGAAGCAAGCAAGGCATCGTGTCTGCGACTCGAGAAAATTCCCTCTATAATGCTATCTGGGTAGCACAAGCACTTC TTCGTAAAGGGTAATGCACTTAGTATACACATATTACAGTCTTATCTACATGGTTATCGATAAGTGATAATGGGGAAACATTTATACTAGGTCAGCAAAG ACAGTAGATAAGCGCATGCTTTTGTTCACAAATGAAGATGATCCTTTTGGGAGTATGAATGGGGCTATAAAATCAGACATGACAAGAACGACACTGCAGA GAGCTAAAGATGCACAGGATCTTGGCATCTCTATTGAACTTCTTCCCTTGAGTTGCCCTGACGAAGTATTCAATGTTTCTCAATTCTATGCTGATTTGAT TGGGCTGGAAGGAGATCATCTTGTTGACTTTATGCCATCAGCAGGAAACAAATTGGAGGATATGAAAGATCAGCTAAGAAAACGCATGTTTACAAAGCGC ATAGTCAAAAGGATTAAATTTATGATAGCGAATGGGATATCTATAGATCTGAATTCATATGCCTTAATTCGTCCCACTGTGCCGGGAGCAATCACATGGC TTGATTCTGTTACGAATCGTCCTTTGAAGAGTGAAAGAACTTTCATTTGTGCTGATACTGGTGCCCTGGTGGAAGAATCTTCTAGACGATTTCATCCATA TAAAAAGTATGCAGTTGATTTGATGCTTATATCTTTATCTTATTTACCATTTTGAGTGTTTTGCACTATTTTCTCAGGTATTCGTTTTTCTAAGAAGATT GGACTTCGCTAATTATAGCAACCCTACTAAGTAGGCCATCACTTTGCTCTGACAATAGGAGTTTCTTGGATGTTGATTACATTGGGTTCTATGTTGTGGG AAAATGTTCTCTATAAAAAGCAGGAAGTGAAATGACTTTATTAATTAGGAAATTCCTTTGAGTGATAATTCTTAGTCCGTTTCATTTTGGCATTATGTTC TTGATAAGGTCTCTAAGAATTTGGATAATTGGAAGGGTGTTTTTTCTGGTTGGTCTACGGTCATATTATTATATTCTGTCCTGCTTGTTTAGTGACACCT TTTATTTCTTTTCCTCAGATAGTACTTGGAGAGAATCATAGGTTGGACAATTATTCTGGGTTTTCTGTGGTCATGGGTGAGGGTAACAATAGTGTCTTGT TATGGATAGATCTAGTTAGAATTTAGAAAATGTTTTTTTTTATTCTTACAAAAAGAAGCTAATGCTCTTTGGAATGGTTTGTTTGCATTTGTTGATGAAG TAGACTGACTACTCATAGGCAAGATTGGGGTATCAGGCTACAAATCAAACTTATGAGTTTGTTGAAGCCGAGTGCTTTATTGGACACTCACATAAATTTG CTTGCTAACTACATCTGCCTGGGGGAATACCTCGAATGCCCTTATTCTAATTTTTGAAGTTGTGTTGTTTCCTTTTGTTTTTAGTTATGATGTAACATTT ATTTGTGTATATTTTTCAGCCAGAATATTACATTTTCAATGAAGGAACTGATTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAA GCCACTAAATTGTTTGAGAGATTATCACAACCTGAGGCCATCAACTTTCCTTTACCCAAGTGATGAGGTTATTGTTCTTCTAGTCATCAATCAAACCATT GATTGCATTTTTAGTCATCAACAATTTTTGGTTTTAATTGCAGTTTGCCTACCTGGCACTGCTTTCTTATCCCATTCTTTTAATAGTTTAATTTTGGTAA CAAATCATAATTATACCACTTTAAGCTTCCTTCAAGTTATCGTTCCATGTTAAAGCATATGATATATCCAAATCATCAAATGAGTGCTTATACTGTCCTA GTGTCCTATTGGACAATGAAAGTTACAAAGCTCATCAATAAAAATATCAGAAAATAATATGTCTTTTTAGGGTGAGACGCAACGCATCAGTAAGGTTGTT TCCTTGTAACTTGGAGGTTACAAGTTCAAATCCAGAAAGGCAGAGACACCTTTGCTAGTTTGCTTGCGAGGTGAGTTTGCATAAATTTCCCTGTCCAGAC CTCACCATGTGAGAGCCTAATGCACTGGGCTTCCTTTGTCCATACTGTATCAGACATTCTAAACTGTGAGCACTTAATCCTTATGACAGTTTACTTCAAT ACAGTTTTCTGTTGGTCTCATTAGTACAAAGGATTTTATAGTGATAATTCTTTTGTGTTCTTACTCTGATATTCTTTCAACTTTTTGTCCTTTGCTCATG TTCTTCTTTCACCAGTTCCTCTGCCCTCAGTTTAAAACTAACATAGATCCTTTTAATTTAGACATTTTAGAAACTTGTCTTGATTTATGGTCGAACCAAA AAACTAGTTGAAGGTGTTGATCATGTCTATCTTCCAATTTATGGTAGACAACATGAAGTGATATTCTTATATACTGACCTGTCTGTATTATGCAAAAAAA ATTGTGCAGTTAGTAATTGTTCCCAAGTGTATCTTATATGCTTCTCTTTTTTGTATTATTCTCTATTTATTATGTCCTTGTAATGTCTCATTTTGTTTTG CAGGGTATGGATGGTAGCATGTGTATCTTCGTTGCCCTCCATAGGTCCATGATACAGCTCAATC BLAST |
Tissue | pods |
Gene name | LI_gene_170952; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_416203
Blastp | ATP-dependent DNA helicase 2 subunit KU70 from Arabidopsis with 63.84% of identity |
---|---|
Blastx | ATP-dependent DNA helicase 2 subunit KU70 from Arabidopsis with 64.32% of identity |
Eggnog | X-ray repair complementing defective repair in Chinese hamster cells 6(ENOG410XNXU) |
Kegg | Link to kegg annotations (AT1G16970) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019441577.1) |
Pfam | Ku70/Ku80 N-terminal alpha/beta domain (PF03731.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |