| Id Trinity | TRINITY_DN49638_c1_g5_i4 |
|---|---|
| Name Transcript | Ll_transcript_414018 |
| Sequence | CTCGAATTTCAGGAAATTCCCTATATGACATGGGCATCTAGCACAAGGTCAAGTTCCACAAAAGTAACATTATTGAGGGGCAATAGTCATTTTCTCTCTC TCCCAATCTATATATCTAGACCAAGCAGCCTTATAATAGAAGAGGGCACAAGAAAGTTGAAGCTATCGCCAAAAGCAGAAAAACACTTTCAAGAGAGTGG AAAATAAAAAATAATAGAGCTTTTCTTTTTCATTTTGCTATATTGCTAGTTTGGGATTTTATTGAAAGGCCAAAAATGGCAACAACTTTGCTGGGACAGG AGCATGGATTGAACCTGAAGGAGACTGAGCTTTGCCTTGGTTTACCTGGTGGTGGTGGTGGTGGTGGTTCTGAGGTGGAAACTCCAAGGGCCAATGGGAA GAGAGGGTTCTCTGAGACTGTTGATCTGAAACTTAATCTTCCTTCTAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTT AAGGACCCTGCCAAACCACCAGCTAAGTAAGTCCATTTTCTCACTTTTCTTTCCTAAATGACTGGTGGCTTATATTTGAGGTTAGCCTTGGGGTAACAAT AAAGTTGTTTTCACTCATGAACTAGGCGGAATAAAACATTTTCAAATCCTAAAAATTTATCAATCTCTTAAGATCCTATCTCATTAGGTCATAACGAATG TCTTTGTTCCATTTTTTATTTCTTGGGTGAAGCATCAAGCTTGTATCAAGAATTCATGATATATATATTCAACTTCTTACAAATTTATTCACAATTATAG TATATAGGTTGCAATTTCCAACAACTTTTATATAATTTTTGTAGCAAAAGAGAGAGCATATAAGAATAAGATTGATGGGCATTATTTGGAAAATCATTGC AGGGCACAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACGTGATGATGGCACAAAAGGTTAACACTGAGGATTGCAATGAGAAGACAAGTT CAGGGTCATTTGTGAAGGTTTCCATGGATGGTGCACCTTACCTACGCAAGGTGGACCTGACAGTGTACAAATGCTACCAAGAATTAGCTGATGCTTTAGC CAAAATGTTCAGCTCCTTCACCATGGGTGACTATGGGACCCAAGGAATGATAGACTTCATGAATGAAAGTAAGTTGATGGATCTTCTGAACAGCTCTGAA TATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGTTCATGCAAGCGTCTGCGAATAATGA AGGGGTCAGAAGCAATTGGGCTTGCCCCAAGAGCCATGGAAAAATGCAAACGCAGAAGCTGAAGCTGGCAAAATACATGTTCTATATAAGAGTTCCGTAT CAAAGTGGACCTATATAAAGATATATGAAGCACTTTTGTGATGTTGTTAGTTTGAATGTGTCTGTGTTTTTTTAATTGTTGGTATATAGATTGATCAGCT TTAATTTTAAGGAGACTATGGGGGCTTTTGTAATGGACAAGAAGCAATAAACATAACCTATATACTAGTCTGGCTTGTTTAATATTATGTGATCCTTCCT TGTTGTCATGCTTGTTGTGTGCTTAATACTTTGTATTTTAATGCATACTTTTATTCCGTTAAGAGATTCTTCATATATCATTGTATTTTATTTTAATGTG TTTTGGTTAAATTGTATACTGCTGAATTATTAATGTCTCAGCTGGATTAAAATTTTATATGGTTCACAAGTGAGCTAGGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_171012; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_414018
| Blastp | Auxin-responsive protein IAA7 from Arabidopsis with 88.14% of identity |
|---|---|
| Blastx | Auxin-responsive protein IAA14 from Arabidopsis with 78.48% of identity |
| Eggnog | Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression(ENOG410YEC3) |
| Kegg | Link to kegg annotations (AT3G23050) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449845.1) |
| Pfam | AUX/IAA family (PF02309.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |