Ll_transcript_414020

• Id Trinity: TRINITY_DN49638_c1_g5_i6
• Name Transcript: Ll_transcript_414020
• Sequence: CTCGAATTTCAGGAAATTCCCTATATGACATGGGCATCTAGCACAAGGTCAAGTTCCACAAAAGTAACATTATTGAGGGGCAATAGTCATTTTCTCTCTC TCCCAATCTATATATCTAGACCAAGCAGCATTATAATAGAAGAAGAGTACACAAGAAAGTGGAAGCTACATACCTATAAGGAGAAAAACACTTTCAAAAA AGAAGGAAAAAAAGAGAGTTTTCTTTTTTCTAGTTTATTGCTGAGGTTTGGGATTTCCATTGACAGGCCAAAAATGGCAACAACTTTGATGGGAAAGGAG CATGGTTTGAACCTGAAGGAGACTGAGCTTTGCCTTGGTTTGCCTGGTGCTGGTGGTGGCTCTGAGGTGGAAACTCCAAGGGCCAATGGGAAGAGAGGGT TCTCTGAGACTGTTGATCTGAAACTTAATCTTCCTTCTAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGACCC TGCCAAACCACCAGCTAAGGCACAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACGTGATGATGGCACAAAAGGTTAACACTGAGGATTGC AATGAGAAGACAAGTTCAGGGTCATTTGTGAAGGTTTCCATGGATGGTGCACCTTACCTACGCAAGGTGGACTTAACAATGTACAGATGTTACCAAGATT TAGCTGATGATTTCGCCAAAATGTTTAGCTCCTTCACCC
• Tissue: pods
• Gene name: LI_gene_171012;
• Additional information: details;

Expression of Ll_transcript_414020

FPKM

• PAB: 56
• PNAB: 13.3
• PS1: 4.2
• PS2: 0.4
• PS3: 3.7
• PW1: 19
• PW2: 41.1
• PW3: 29.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_414020

• Blastp: Auxin-responsive protein IAA14 from Arabidopsis with 66.45% of identity
• Blastx: Auxin-responsive protein IAA14 from Arabidopsis with 66.45% of identity
• Eggnog: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression(ENOG410YEC3)
• Kegg: Link to kegg annotations (AT4G14550)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449845.1)
• Pfam: AUX/IAA family (PF02309.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;