Ll_transcript_416566

• Id Trinity: TRINITY_DN49644_c2_g1_i1
• Name Transcript: Ll_transcript_416566
• Sequence: CAATTACAAATAGTAAGAATAATAAGAATAAGAAACAGTGAGTGATGATGGCACTTCATAAAACTTATCCATTTCTCCATCATTCTAGATTTCGCTGTAT GCTCCATCAAATCCCTCTCTCTCCTTCCCTCACTTCTCTTCTCTCCGCCACCACCACTTCCTCCTCCTCCCTCCACGGTGCTGTCTCCTCCGCCATCACT CATGTCGCCGTCACCGCTCTCGCTATTGCTTCCGGTGCTTGTCTTTCCACCAAGCTTGATTTCTTATGGCCTAAATTGGATCAACAACCAGGTACCATCA TTCAGGATGGAGTAGATGTTACTGGCTACCCTATATTTAATGATGCAAAGGTACACAAGGCTATAGCTTTTGCAAGAAAAGCACATCGCGGCCAAATGCG CAAGACTGGAGACCCTTATTTAACACACTGTATCCATACCGGAAGAATTTTGGCAATGTTGGTTCCATCAAGTGGTAAACGAGCTGTTGACACAGTTGTG GCTGGTATTTTACATGACGTGGTTGATGATACTTGCCAAAGTCTGCAGGACATTGAGGAAGAGTTTGGGGATGATGTGGTCAACTTGGTAGCCGGTGTTT CGAGATTGAGTTATATAAATCAGCTGTTACGCAGACATCGAAGGGTAAACGTGAGCCAGGGCGTCCTAGGCCAAGAAGAGGCAAGTAATTTACGAGTGAT GCTTCTGGGAATGGTTGATGATCCGCGTGTTGTGCTCATCAAGCTTGCCGACCGTCTTCACAACATGAGAACTATTCATGCTCTTCCGTTGCAAAAGGCT CAAGCTGTTGCAGAGGAGACCTTAATTATTTGGTGTTCTCTTGCTTCAAGATTGGGTCTATGGGCATTGCAAGCTGAACTGGAAGATCTATGCTTTGCTG TTCTTCAGCCTCAAGTATTTCAAAAGATGCGAGCTGATCTAGCCTCCATGTGGAGCCCCACTTGCAGAACAGAAAACCCTAGAAGATTCTCTGTAAAAGG AAGCTTGATACCTTTGGATGAGAACAGTTCAACTTCTTCCAGCAATGAATCCTTGACATTAAATGAGGAAGTCTCAAGTATGAAGGATCTTTTGGAAGCT GTGGTCCCATTTGATATATTGTTGGATCGGAGAAAACGGGCTAACTTTCTCTGTGGTATTGGGAATAATCTGGAGACATGCATGAAACCGAAAGTTGTTC AGGATGCTGGGTTGGCTTTGGCATCATTGGTAGTTTGCGAGGAAGCACTTGAGCGAGAATTGATTATATCAGCTTCTTATGTTCCGGGGATGGAGGTCAC ATTATCAAGCAGATTAAAAAGCATGTACAGCTTATATAGTAAGATGAAGCGAAAGGATATAAGCATTGATAAAGTATATGATGCACGTGCATTAAGGGTA GTTGTAGGAGACAAGAATGGAACATTACATGGAGCTGCTGTTCAGGGTTGCTATAGTCTTCTCGACATTGTACACAGGCTTTGGACTCCCATTGATGGTG AATTTGATGACTACATCATCAATCCAAAGCCTAGTGGCTATCAGTCCTTGCACACTGCTGTACAAGGTCCTTGCAACTCTCCTTTAGAAGTACAAATAAG AACACAGGTGCCAAGTTGGTTCACACATTGCTGTGGTTACTTGCCTATGTTTTAGTTCTTGATCTTTTCAATTATCATTATTTTGCTTGCTAGAGGATGC ATCAGTATGCTGAACATGGACTTGCTGCACACTGGCTTTATAAGGAAACTGGTAATCCTTTTTCATCTATAGACAGCATGGATGAACCTGAAACAGAAGA ATCCTCTTATTTCTCCAGAGATATAGAAGAGGGGAATTCTTCAGATATTTTATTAAGTAAATACAAGTCATTGAAGGTTGGACATCCAGTCCTCAGAGTA GAAGGAAGTCACTTACTTCCAGCTGTTATCATTAGTATAGAAAAGGATGAAAGAGAATTGCTAGTTGCTGTCAGCTTTGGGCTAGCAGCTTCTGAAGCCG TAGCTGATAGAAGATCTTTCCAGATTAAGCGATGGGAAGCTTATGCACGACTATACAAAAAGGTGTCTGATGAATGGTGGTTTGAACCAGGACATGGGGA TTGGTTTACTTGTCTAGAGAAATACACACTATGTCGAGATGGCATGTATCATAAGGTATGTTTTTCTGAATAATTGAGAATACAAATTGATATACTTCCA GGTTAGTGTTCATCCATTGTGTTTATCAGCAATGTGGAGACAACGACATACATAAAGCTGGAATTATTTTCTTCTTTAGATAGCATGTTGTTTCTGTGCA GACCAACTGTATTCCAGCTCTTAATGATCAACATTTTATTGGAAATGTGTGTATTGTGTAGCTACTTTTATACAGAAATTTATATAAATTTGGACAATCT TATGCTGTGTCAAATATTGAAGGCTTAATATCTACTACAAGTAATCCAGGAAATTAGTTAACTGTGTAAGTGAACGCATCCTCTTATATGGTTGAGCAGA TAATATATAAGCATTGGGAATATCAGTTTAGAATGTCCTCTGACTGAAGAAAAATCAGATTTCATTCACATGAAGAGTGGGTATTTTACATTAAAAGTTG CCTTCCCGCACTTTAATAATATGTGCGTCACTGTATGCATCTATATTCTGTCAGCTTTGGAAATTCCCGTCATTTATGTCACCCTTTATCGTTTTAGGTT TCCCTATCAAAGGGGATTTCTCTTTCATTTAAAGATAATGGTTCATGTTAGTTAGTCTTCATGTCATTATAATTGCTATTAATTGGAAGGAATGATTGTT TTTGAAACATGGAAATTTATTGACATATTTTAGAGTTCAAACACCTAAATGAAGTAAGTGGGGCTATTTAATGCCTACTAAATCATGCCGACTGTTTTTC AATTCCTGGTTTCATTAGGCCTTTAATGGGATTGTAACTTATCCGAATGGGATAGCAACCCATGTGAGAGTCTAGTTTCTTACTGTTCTTAGTCTGCTCT ATAGCTGCACTTTGCACACGTATAGATTCCTTGTAACTTTTTGTCCCTCTGGCACCTTAATAAAATAAATATTTTTGCCAATAAAAAAGATGAAGAACTT CATATAATTATTTGCTTCAATTGCAGCAAGACCAATTTGGGCGTCTACTGCCAACATTCATCCAGGTTATCAATTTTACTGAGCAAGAAGAAACTGAATA TTGCGCTGTAGTGTCTGCTGTGTTTGAGGGAAGGCAGGTGGATTGTATTACATCATCACAATCAAAATTTGATTTTGTTGCATCAACTTCTGAGGAAGCT AGCATCAATAACAAGGTTTTTCAGCAACTAACTTGCATTCTGAATGAAATTTGTATTCGAAATTGCTTGTCATCATTTACTTCTGTTTCTTTTCTTAACA AATGTGAAATTTGCTCTGCCTAGATTTCAATTCTCTCATTTGAACTTTTCACATGACTATGATAATATAAACATAGGTACAAAGGCAAAACTAATGAACT TGTTGACATGAGAGAATCCCTCAGCAAAGCCATTAAGATGGTACAAATCAATGCCTAACCTGCATAGTTGGCATAAATGCAGCTATGAAAGTATTAAGTT TGTCTGCCACCATGCAAATTGAAAGTATTAAGCTGATACCCTTCTATGTATTCTAGTTGACTGTATGTATTCATCTTTTAGGTGCAACTTTTGAGAACAA TGCTTTCCTGGGAAGAACAATTGCGATCTGAAGTAAGTATGAATGAAACAAAGCATGACGCAAAGCTTTATGATCTTCCGGGCTCTCCAAACCTTAGAGA AGTGGTAATTATATGTTGGCCTCATGGTGATATTATGAGGTTAAAAGCTGGTAGCACAGCTGCTGATGCTGCTCACAGATTTGGTTTCGAGGGAAAGCTG GTTTTGATCAACGGCCAGTTAGTACTGCCCCATACCAAGCTCAGAGATGGTGATGTTCTTGAAGTAAGGATCTAAATCATTCATTCGCAACATTACTGTT AAAAAAATTGTAAATATTTTTTACGGGTTCTTTGTAATTAAAGTTGGTGGGGGCAGAAATAGGCAGATTTTCTTGTATGTTGGGGGATTTGGTAAAGTAA AAAATGTTCTTTTAACCAAATTTCAAATTTGGTGGTTTTAAACTTAATTCCATGGATATGTTGGATAACCACATTTGCCATCATATAATTACCCTTCTAT GTATTCTAGTTAACTAGCTTACTCACATATGTTCACTATTGTAGCTACTATCTAATTCCAATCCTATTTTACA
• Tissue: pods
• Gene name: LI_gene_171061;
• Additional information: details;

Expression of Ll_transcript_416566

FPKM

• PAB: 1.2
• PNAB: 0
• PS1: 0.3
• PS2: 0
• PS3: 0
• PW1: 0.5
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_416566

• Blastp: Probable GTP diphosphokinase RSH3, chloroplastic from Arabidopsis with 47.76% of identity
• Blastx: Probable GTP diphosphokinase RSH3, chloroplastic from Arabidopsis with 47.76% of identity
• Eggnog: In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance (By similarity)(COG0317)
• Kegg: Link to kegg annotations (AT1G54130)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423473.1)
• Pfam: HD domain (PF13328.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;