Id Trinity | TRINITY_DN49644_c2_g1_i11 |
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Name Transcript | Ll_transcript_416577 |
Sequence | CAATTACAAATAGTAAGAATAATAAGAATAAGAAACAGTGAGTGATGATGGCACTTCATAAAACTTATCCATTTCTCCATCATTCTAGATTTCGCTGTAT GCTCCATCAAATCCCTCTCTCTCCTTCCCTCACTTCTCTTCTCTCCGCCACCACCACTTCCTCCTCCTCCCTCCACGGTGCTGTCTCCTCCGCCATCACT CATGTCGCCGTCACCGCTCTCGCTATTGCTTCCGGTGCTTGTCTTTCCACCAAGCTTGATTTCTTATGGCCTAAATTGGATCAACAACCAGGTACCATCA TTCAGGATGGAGTAGATGTTACTGGCTACCCTATATTTAATGATGCAAAGGTACACAAGGCTATAGCTTTTGCAAGAAAAGCACATCGCGGCCAAATGCG CAAGACTGGAGACCCTTATTTAACACACTGTATCCATACCGGAAGAATTTTGGCAATGTTGGTTCCATCAAGTGGTAAACGAGCTGTTGACACAGTTGTG GCTGGTATTTTACATGACGTGGTTGATGATACTTGCCAAAGTCTGCAGGACATTGAGGAAGAGTTTGGGGATGATGTGGTCAACTTGGTAGCCGGTGTTT CGAGATTGAGTTATATAAATCAGGTATGCTTTTTCATTTTCAAGGAAGTGGCACATTATGGTTTGCCTTATTTAGTTAGTTGTTAGAGGCATAAAGCATT TGTACCTTCACCTAGCAACTTAATCTTTAGCTTTTGGGTTGTGCTGGTCCTTGACATGGTGTTAAAACAACTTTTACTTCTTGTTGCTCTATTCTTCATA ATTGTAGTAAATTTCAGTACAGGGTATAGCAAACCTGTAAACCATTTCTAAGTCTATACCTAATAGCTTAAGCTTTTAAGAGAGTTAGTTTTCAACAGTT ATTGCATAACTAGGATGTAATACCTTAGTAACTTGTTTACTATGTGGTAGATTATAATGATGGCATGTATTATGTTGTTTCATCAAGTTTCTGTACTGTA TGTTTGTAGCTCAATTCTTCTGACAACTCTGCTAAGTATATCCACTGTTTTCTTTCATTACCCTATTATATAATAAGTAAATTATCTTTGAAGCTGTTAC GCAGACATCGAAGGGTAAACGTGAGCCAGGGCGTCCTAGGCCAAGAAGAGGTATATATAGAATCTGTATTTAACATGTGTCAATTAGCTACTGATACTCC TAGGTGTACTTTGGTGTTATGCTAGTCATCAGTAATCAAATATAAAGATTCAGATAGCTGCCTTGGTGTGATGTTAGTAATCAGTAACCAAATATAACGA ATCAGATAGCTGCCTAATATAGGTTTAAACAACACAAATCAACATGTGAAATGGAGAATGCATCATATTCTCCTCTTGTCGTATTATAAACAAATGATAC CTTTCCTTGCAGAAGCTTGGAGTTGGTTCAATTTCATATAGAATCTGTTTAATCTTATGACTCTAATTTTAAACAAGAAGTTGATATGATAAATGTTTTG TTTCTGTCATTATAATGCATCTGTTTGTTGATCAAAATAATATTTAAACTATATGCCATTTGAGATTTGTAAAATATGTACTATATTGGGCAGTGGAATT AGCAGTGGAGAATTTTCTTATGTGTTACATTCTTAATCTCCTAGGCAAGTAATTTACGAGTGATGCTTCTGGGAATGGTTGATGATCCGCGTGTTGTGCT CATCAAGCTTGCCGACCGTCTTCACAACATGAGAACTATGTATTGGCTCTGATCTTCATTTTTTTGCCTTTATGCCTAAGCAATTCCAGTCTTCGTTATT TTTCCTTTTGTGTTCTTCACTTCATAACGGTTAATCTTTAAAGTCATGCTCTTCCGTTGCAAAAGGCTCAAGCTGTTGCAGAGGAGACCTTAATTATTTG GTGTTCTCTTGCTTCAAGATTGGGTCTATGGGCATTGCAAGCTGAACTGGAAGATCTATGCTTTGCTGTTCTTCAGCCTCAAGTATTTCAAAAGATGCGA GCTGATCTAGCCTCCATGTGGAGCCCCACTTGCAGAACAGAAAACCCTAGAAGATTCTCTGTAAAAGGAAGCTTGATACCTTTGGATGAGAACAGTTCAA CTTCTTCCAGCAATGAATCCTTGACATTAAATGAGGAAGTCTCAAGTATGAAGGATCTTTTGGAAGCTGTGGTCCCATTTGATATATTGTTGGATCGGAG AAAACGGGCTAACTTTCTCTGTGGTATTGGGAATAATCTGGAGACATGCATGAAACCGAAAGTTGTTCAGGATGCTGGGTTGGCTTTGGCATCATTGGTA GTTTGCGAGGAAGCACTTGAGCGAGAATTGATTATATCAGCTTCTTATGTTCCGGGGATGGAGGTCACATTATCAAGCAGATTAAAAAGCATGTACAGCT TATATAGTAAGATGAAGCGAAAGGATATAAGCATTGATAAAGTATATGATGCACGTGCATTAAGGGTAGTTGTAGGAGACAAGAATGGAACATTACATGG AGCTGCTGTTCAGGGTTGCTATAGTCTTCTCGACATTGTACACAGGCTTTGGACTCCCATTGATGGTGAATTTGATGACTACATCATCAATCCAAAGCCT AGTGGCTATCAGTCCTTGCACACTGCTGTACAAGGTCCTTGCAACTCTCCTTTAGAAGTACAAATAAGAACACAGAGGATGCATCAGTATGCTGAACATG GACTTGCTGCACACTGGCTTTATAAGGAAACTGGTAATCCTTTTTCATCTATAGACAGCATGGATGAACCTGAAACAGAAGAATCCTCTTATTTCTCCAG AGATATAGAAGAGGGGAATTCTTCAGATATTTTATTAAGTAAATACAAGTCATTGAAGGTTGGACATCCAGTCCTCAGAGTAGAAGGAAGTCACTTACTT CCAGCTGTTATCATTAGTATAGAAAAGGATGAAAGAGAATTGCTAGTTGCTGTCAGCTTTGGGCTAGCAGCTTCTGAAGCCGTAGCTGATAGAAGATCTT TCCAGATTAAGCGATGGGAAGCTTATGCACGACTATACAAAAAGGTGTCTGATGAATGGTGGTTTGAACCAGGACATGGGGATTGGTTTACTTGTCTAGA GAAATACACACTATGTCGAGATGGCATGTATCATAAGGTATGTTTTTCTGAATAATTGAGAATACAAATTGATATACTTCCAGGTTAGTGTTCATCCATT GTGTTTATCAGCAATGTGGAGACAACGACATACATAAAGCTGGAATTATTTTCTTCTTTAGATAGCATGTTGTTTCTGTGCAGACCAACTGTATTCCAGC TCTTAATGATCAACATTTTATTGGAAATGTGTGTATTGTGTAGCTACTTTTATACAGAAATTTATATAAATTTGGACAATCTTATGCTGTGTCAAATATT GAAGGCTTAATATCTACTACAAGTAATCCAGGAAATTAGTTAACTGTGTAAGTGAACGCATCCTCTTATATGGTTGAGCAGATAATATATAAGCATTGGG AATATCAGTTTAGAATGTCCTCTGACTGAAGAAAAATCAGATTTCATTCACATGAAGAGTGGGTATTTTACATTAAAAGTTGCCTTCCCGCACTTTAATA ATATGTGCGTCACTGTATGCATCTATATTCTGTCAGCTTTGGAAATTCCCGTCATTTATGTCACCCTTTATCGTTTTAGGTTTCCCTATCAAAGGGGATT TCTCTTTCATTTAAAGATAATGGTTCATGTTAGTTAGTCTTCATGTCATTATAATTGCTATTAATTGGAAGGAATGATTGTTTTTGAAACATGGAAATTT ATTGACATATTTTAGAGTTCAAACACCTAAATGAAGTAAGTGGGGCTATTTAATGCCTACTAAATCATGCCGACTGTTTTTCAATTCCTGGTTTCATTAG GCCTTTAATGGGATTGTAACTTATCCGAATGGGATAGCAACCCATGTGAGAGTCTAGTTTCTTACTGTTCTTAGTCTGCTCTATAGCTGCACTTTGCACA CGTATAGATTCCTTGTAACTTTTTGTCCCTCTGGCACCTTAATAAAATAAATATTTTTGCCAATAAAAAAGATGAAGAACTTCATATAATTATTTGCTTC AATTGCAGCAAGACCAATTTGGGCGTCTACTGCCAACATTCATCCAGGTTATCAATTTTACTGAGCAAGAAGAAACTGAATATTGCGCTGTAGTGTCTGC TGTGTTTGAGGGAAGGCAGGTGGATTGTATTACATCATCACAATCAAAATTTGATTTTGTTGCATCAACTTCTGAGGAAGCTAGCATCAATAACAAGGTT TTTCAGCAACTAACTTGCATTCTGAATGAAATTTGTATTCGAAATTGCTTGTCATCATTTACTTCTGTTTCTTTTCTTAACAAATGTGAAATTTGCTCTG CCTAGATTTCAATTCTCTCATTTGAACTTTTCACATGACTATGATAATATAAACATAGGTACAAAGGCAAAACTAATGAACTTGTTGACATGAGAGAATC CCTCAGCAAAGCCATTAAGATGGTACAAATCAATGCCTAACCTGCATAGTTGGCATAAATGCAGCTATGAAAGTATTAAGTTTGTCTGCCACCATGCAAA TTGAAAGTATTAAGCTGATACCCTTCTATGTATTCTAGTTGACTGTATGTATTCATCTTTTAGGTGCAACTTTTGAGAACAATGCTTTCCTGGGAAGAAC AATTGCGATCTGAAGTAAGTATGAATGAAACAAAGCATGACGCAAAGCTTTATGATCTTCCGGGCTCTCCAAACCTTAGAGAAGTGGTAATTATATGTTG GCCTCATGGTGATATTATGAGGTTAAAAGCTGGTAGCACAGCTGCTGATGCTGCTCACAGATTTGGTTTCGAGGGAAAGCTGGTTTTGATCAACGGCCAG TTAGTACTGCCCCATACCAAGCTCAGAGATGGTGATGTTCTTGAAGTAAGGATCTAAATCATTCATTCGCAACATTACTGTTAAAAAAATTGTAAATATT TTTTACGGGTTCTTTGTAATTAAAGTTGGTGGGGGCAGAAATAGGCAGATTTTCTTGTATGTTGGGGGATTTGGTAAAGTAAAAAATGTTCTTTTAACCA AATTTCAAATTTGGTGGTTTTAAACTTAATTCCATGGATATGTTGGATAACCACATTTGCCATCATATAATTACCCTTCTATGTATTCTAGTTAACTAGC TTACTCACATATGTTCACTATTGTAGCTACTATCTAATTCCAATCCTATTTTACA BLAST |
Tissue | pods |
Gene name | LI_gene_171061; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_416577
Blastp | Probable GTP diphosphokinase RSH2, chloroplastic from Oryza sativa with 48.51% of identity |
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Blastx | Probable GTP diphosphokinase RSH2, chloroplastic from Oryza sativa with 48.51% of identity |
Eggnog | In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance (By similarity)(COG0317) |
Kegg | Link to kegg annotations (4345756) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019423473.1) |
Pfam | Region found in RelA / SpoT proteins (PF04607.16) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |