| Id Trinity | TRINITY_DN49644_c2_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_416572 |
| Sequence | CAATTACAAATAGTAAGAATAATAAGAATAAGAAACAGTGAGTGATGATGGCACTTCATAAAACTTATCCATTTCTCCATCATTCTAGATTTCGCTGTAT GCTCCATCACATCCCTCTCTCTCCTTCCCTCACTTCTCTTCTCTCCGCCACCACCACTTCCTCCTCCTCCCTCCACGGTGCTGTCTCCTCCGCCATCACT CATGTCGCCGTCACCGCTCTCGCTATTGCTTCCGGTGCTTGTCTTTCCACCAAGCTTGATTTCTTATGGCCTAAATTGGATCAACAACCAGGTACCATCA TTCAGGATGGAGTAGATGTTACTGGCTACCCTATATTTAATGATGCAAAGGTTTAATGTCTCTCTGCTTCTGGTATCACTTCTATCTTATTATGTTACAT CCTTCAAATACCTTGTTTGTCAAGGCAGGTACACAAGGCTATAGCTTTTGCAAGAAAAGCACATCGCGGCCAAATGCGCAAGACTGGAGACCCTTATTTA ACACACTGTATCCATACCGGAAGAATTTTGGCAATGTTGGTTCCATCAAGTGGTAAACGAGCTGTTGACACAGTTGTGGCTGGTATTTTACATGACGTGG TTGATGATACTTGCCAAAGTCTGCAGGACATTGAGGAAGAGTTTGGGGATGATGTGGTCAACTTGGTAGCCGGTGTTTCGAGATTGAGTTATATAAATCA GCTGTTACGCAGACATCGAAGGGTAAACGTGAGCCAGGGCGTCCTAGGCCAAGAAGAGGCAAGTAATTTACGAGTGATGCTTCTGGGAATGGTTGATGAT CCGCGTGTTGTGCTCATCAAGCTTGCCGACCGTCTTCACAACATGAGAACTATTCATGCTCTTCCGTTGCAAAAGGCTCAAGCTGTTGCAGAGGAGACCT TAATTATTTGGTGTTCTCTTGCTTCAAGATTGGGTCTATGGGCATTGCAAGCTGAACTGGAAGATCTATGCTTTGCTGTTCTTCAGCCTCAAGTATTTCA AAAGATGCGAGCTGATCTAGCCTCCATGTGGAGCCCCACTTGCAGAACAGAAAACCCTAGAAGATTCTCTGTAAAAGGAAGCTTGATACCTTTGGATGAG AACAGTTCAACTTCTTCCAGCAATGAATCCTTGACATTAAATGAGGAAGTCTCAAGTATGAAGGATCTTTTGGAAGCTGTGGTCCCATTTGATATATTGT TGGATCGGAGAAAACGGGCTAACTTTCTCTGTGGTATTGGGAATAATCTGGAGACATGCATGAAACCGAAAGTTGTTCAGGATGCTGGGTTGGCTTTGGC ATCATTGGTAGTTTGCGAGGAAGCACTTGAGCGAGAATTGATTATATCAGCTTCTTATGTTCCGGGGATGGAGGTCACATTATCAAGCAGATTAAAAAGC ATGTACAGCTTATATAGTAAGATGAAGCGAAAGGATATAAGCATTGATAAAGTATATGATGCACGTGCATTAAGGGTAGTTGTAGGAGACAAGAATGGAA CATTACATGGAGCTGCTGTTCAGGGTTGCTATAGTCTTCTCGACATTGTACACAGGCTTTGGACTCCCATTGATGGTGAATTTGATGACTACATCATCAA TCCAAAGCCTAGTGGCTATCAGTCCTTGCACACTGCTGTACAAGGTCCTTGCAACTCTCCTTTAGAAGTACAAATAAGAACACAGAGGATGCATCAGTAT GCTGAACATGGACTTGCTGCACACTGGCTTTATAAGGAAACTGGTAATCCTTTTTCATCTATAGACAGCATGGATGAACCTGAAACAGAAGAATCCTCTT ATTTCTCCAGAGATATAGAAGAGGGGAATTCTTCAGATATTTTATTAAGTAAATACAAGTCATTGAAGGTTGGACATCCAGTCCTCAGAGTAGAAGGAAG TCACTTACTTCCAGCTGTTATCATTAGTATAGAAAAGGATGAAAGAGAATTGCTAGTTGCTGTCAGCTTTGGGCTAGCAGCTTCTGAAGCCGTAGCTGAT AGAAGATCTTTCCAGATTAAGCGATGGGAAGCTTATGCACGACTATACAAAAAGGTGTCTGATGAATGGTGGTTTGAACCAGGACATGGGGATTGGTTTA CTTGTCTAGAGAAATACACACTATGTCGAGATGGCATGTATCATAAGGTATGTTTTTCTGAATAATTGAGAATACAAATTGATATACTTCCAGGTTAGTG TTCATCCATTGTGTTTATCAGCAATGTGGAGACAACGACATACATAAAGCTGGAATTATTTTCTTCTTTAGATAGCATGTTGTTTCTGTGCAGACCAACT GTATTCCAGCTCTTAATGATCAACATTTTATTGGAAATGTGTGTATTGTGTAGCTACTTTTATACAGAAATTTATATAAATTTGGACAATCTTATGCTGT GTCAAATATTGAAGGCTTAATATCTACTACAAGTAATCCAGGAAATTAGTTAACTGTGTAAGTGAACGCATCCTCTTATATGGTTGAGCAGATAATATAT AAGCATTGGGAATATCAGTTTAGAATGTCCTCTGACTGAAGAAAAATCAGATTTCATTCACATGAAGAGTGGGTATTTTACATTAAAAGTTGCCTTCCCG CACTTTAATAATATGTGCGTCACTGTATGCATCTATATTCTGTCAGCTTTGGAAATTCCCGTCATTTATGTCACCCTTTATCGTTTTAGGTTTCCCTATC AAAGGGGATTTCTCTTTCATTTAAAGATAATGGTTCATGTTAGTTAGTCTTCATGTCATTATAATTGCTATTAATTGGAAGGAATGATTGTTTTTGAAAC ATGGAAATTTATTGACATATTTTAGAGTTCAAACACCTAAATGAAGTAAGTGGGGCTATTTAATGCCTACTAAATCATGCCGACTGTTTTTCAATTCCTG GTTTCATTAGGCCTTTAATGGGATTGTAACTTATCCGAATGGGATAGCAACCCATGTGAGAGTCTAGTTTCTTACTGTTCTTAGTCTGCTCTATAGCTGC ACTTTGCACACGTATAGATTCCTTGTAACTTTTTGTCCCTCTGGCACCTTAATAAAATAAATATTTTTGCCAATAAAAAAGATGAAGAACTTCATATAAT TATTTGCTTCAATTGCAGCAAGACCAATTTGGGCGTCTACTGCCAACATTCATCCAGGTTATCAATTTTACTGAGCAAGAAGAAACTGAATATTGCGCTG TAGTGTCTGCTGTGTTTGAGGGAAGGCAGGTGGATTGTATTACATCATCACAATCAAAATTTGATTTTGTTGCATCAACTTCTGAGGAAGCTAGCATCAA TAACAAGGTTTTTCAGCAACTAACTTGCATTCTGAATGAAATTTGTATTCGAAATTGCTTGTCATCATTTACTTCTGTTTCTTTTCTTAACAAATGTGAA ATTTGCTCTGCCTAGATTTCAATTCTCTCATTTGAACTTTTCACATGACTATGATAATATAAACATAGGTACAAAGGCAAAACTAATGAACTTGTTGACA TGAGAGAATCCCTCAGCAAAGCCATTAAGATGGTACAAATCAATGCCTAACCTGCATAGTTGGCATAAATGCAGCTATGAAAGTATTAAGTTTGTCTGCC ACCATGCAAATTGAAAGTATTAAGCTGATACCCTTCTATGTATTCTAGTTGACTGTATGTATTCATCTTTTAGGTGCAACTTTTGAGAACAATGCTTTCC TGGGAAGAACAATTGCGATCTGAAGTAAGTATGAATGAAACAAAGCATGACGCAAAGCTTTATGATCTTCCGGGCTCTCCAAACCTTAGAGAAGTGGTAA TTATATGTTGGCCTCATGGTGATATTATGAGGTTAAAAGCTGGTAGCACAGCTGCTGATGCTGCTCACAGATTTGGTTTCGAGGGAAAGCTGGTTTTGAT CAACGGCCAGTTAGTACTGCCCCATACCAAGCTCAGAGATGGTGATGTTCTTGAAGTAAGGATCTAAATCATTCATTCGCAACATTACTGTTAAAAAAAT TGTAAATATTTTTTACGGGTTCTTTGTAATTAAAGTTGGTGGGGGCAGAAATAGGCAGATTTTCTTGTATGTTGGGGGATTTGGTAAAGTAAAAAATGTT CTTTTAACCAAATTTCAAATTTGGTGGTTTTAAACTTAATTCCATGGATATGTTGGATAACCACATTTGCCATCATATAATTACCCTTCTATGTATTCTA GTTAACTAGCTTACTCACATATGTTCACTATTGTAGCTACTATCTAATTCCAATCCTATTTTACA BLAST |
| Tissue | pods |
| Gene name | LI_gene_171061; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_416572
| Blastp | Probable GTP diphosphokinase RSH3, chloroplastic from Arabidopsis with 46.63% of identity |
|---|---|
| Blastx | Probable GTP diphosphokinase RSH3, chloroplastic from Arabidopsis with 48.19% of identity |
| Eggnog | In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance (By similarity)(COG0317) |
| Kegg | Link to kegg annotations (AT1G54130) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423473.1) |
| Pfam | HD domain (PF13328.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |