Ll_transcript_414233

• Id Trinity: TRINITY_DN49658_c0_g1_i2
• Name Transcript: Ll_transcript_414233
• Sequence: GTTTTTTGTTTGAGAAGAAAGAGTGTGTGCATATTGTGCAAGTGTTGAAATGGGTGGAAGAAGAAGAAAGGGTTTGAATGAGAAGAAAGAGAATACGAAG AAACGTTCAAAATCAATTGAACCTTCTTCAACTTCCACCATAGATTCTCATTCTTCTCGCTTCAATATTCAAAACCTTGCTTTCGATAACTATTACAAGG AACAACGAATCGTTACTTCTCAACAATGGGATTCATTCCTCAACCTTCTCAGAACTCCATTACCTTCCTCTTTCAGAATCAATTCCAATAGTCAATTTTC TGAGGATATTCGGTTCCAATTGGAGAATGATTTTGCGCATTCACTTCGGTTTGAGAGTGTTGAAGAGGATAATGTGGATCCTGTTATACCTTTGCCATGG TATCCGGAGAACCTTGCATGGCAATCGAAATTTTCGCGTATGCAACTTAGGAAGAATCAAACACTAACGAGGTTTCATGAATTCTTAAAGCTACAAAGTG AAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTTCCTCCTCTGTTCTTGGATATACGTTCAAATCATCTTGTACTTGACATGTGTGCTGCACC TGGTTCAAAAACATTCCAATTGCTCGAGATTATACACAAATCTACTGAAACAGGATCATTGCCTGAAGGAATGGTTATAGCAAATGATCTAGATATACAA AGATGTAATCTTCTCATCCACCAAGCAAAACGACTGTGCACATCAAATCTAATCGTCACTAATCATGAAGCTCAGAACTTCCCAGGATGTTTTTTAAACA GGAATTATGATGCAATGGAGCCTGATCAGAGTATCGACCAACTGTTATTCGATCGTGTTCTATGTGATGTCCCATGCAGCGGAGATGGTACCCTTCGTAA GGCACCTGAGCTCTGGAGGAAATGGAATACTGGGACAGGAAATGGGCTTCATAACCTACAAGTTCTAATTGCTATTCGAGGCTTATCTTTACTTAAAGTT GGTGGAAGAATGGTTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCCGTGGTTGCAGAGGTTTTGAGGAGGTCTGGAGGATCTATTGAACTTG TAGATGTCTCTAGTGAGCTTCCCCAACTTATTCGTCGGCCAGGTCTTAAGAGATGGAAGGTATCTGACAAGGGTTTGTGGTTGGTTTCTTGCAAAGATGT TCCTAAGTCTCGTAGAACTGTAGTTCTTCCTAGCATGTTTCCAGCTGGCGGTAGTTATCAGGATGCTGTCCGCATTGGAGATGATACTACTGATGATGCT AATGGAATTTCTGAAGATGTTCAAGCAGTGGAGAATCCTGTGATGCACGAGTTTACTGATGAAGATTCTGGTTTCCGTCTAGAGCGTTGCATGAGGTTAG TGCCCCATGATCAGAACACTGGAGCCTTCTTTGTTGCCGTGTTACAGAAAGTTTCTCCTCTGCCAGCATTTCAGGTAAAACCTAGAAAAGAAGTTGATAA CCAACATGTAGAACCAGCAAACCAGAGGAATGAGCATGCACAAGAATTGCAAATTAACGACAATGAACCCAATGCAGCAGATTTAGAAATTAGTCCTGTT ACATGTGAAGAAGGGGATTCCAATGGGGCCCAAGAACCCTGTGATGTAGAAAACATAGCAAAGATTATTCCAGGCAACAGAAAGTTGCAGAGTCGAGGCA GATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGATGAAGTAATTATTAGCACCATAAAGACATTTTATGGTATTGACGAGAAGTTTCCGTTTGATGG TCATCTTGTTACAAGAAACAATGATACAAGCCATGTGAAAAGAATTTACTATGTCTCCAAGTCAGTGAAGGATGTTCTTGAGTTGAACTTCTCAGTTGGA CAGCAACTTAAAATTACTTCTGTTGGCCTGAAGATTTTTGAAAGACAAACGTCACTGGCTGGTATCTTTGCATCATGTGCTTTTCGGATATCATCTGAAG GATTGCCCCTTGTTCTCCCTCACATCACCAAACAGATTCTACGTGCGTCTCCTATAGACTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGA TTTTGTTGACGCCGAGTTTGGTGAAAGAGCAGCAAACTTAATGCCAGGCTGTTGTGTCATAGTTTTGGGCGAAGGGAACAAAGCTGCTACAAAGACCCTC CGAGTGGATAAATCAACAATAGCCATTGGATGCTGGAAGGGTGGGGCGACGTTGACCCTGATGGTTACTGAACTGGATCGCCAAGAACTGCTCGAAAGGT TTTTAACGCGTTTCGACACAGAAAAGGACTCCTCCATGAACGGGAACAATCTTTCTAACAGCGTTGGAGACGATGTACAAGACTCCTATGGTAACGATGA TGTCGAAGCTAATGGGTGTTAGAAGCGAGTAGTTAGACGATATTGATTATGCTACCACTTTGTGTAATCAAACTAGATTTTTACATGTTGCACATGGCTC ACATACTTATGAGCATTTACATTGTGTTTTTTTGTAACATTAAATCTTTGGAGTTCTCATCCATGTAGCCGATTCCATCTAGTCTCGGTTGTTGTATTTT TAAATCATTAGGGTTAAGGATGTCTAACACATCACAGGGTTAGAGTATAAGCCCTTCAACATTGTTAGGGGGTTGAGTTCCTTCTTTAGAGGTCGAATGA GACCTTGAAATCTCGTCTTCTATTGTCCATCTTAGAAAATACAAACCCAAATTTTGGATTTGATTTATTTGTTGATGCAAATACAATAAAAAACAGCTTT AGTAAACTCAAAGTAATTTGCAAAAAGAATGAAATAAACTTTGGTGAAAGGGTTACAATGGCAGTACCATTACCA
• Tissue: pods
• Gene name: LI_gene_171155;
• Additional information: details;

Expression of Ll_transcript_414233

FPKM

• PAB: 0.5
• PNAB: 3.7
• PS1: 4.7
• PS2: 4.4
• PS3: 5.5
• PW1: 3.4
• PW2: 2.7
• PW3: 1.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_414233

• Blastp: tRNA (cytosine(34)-C(5))-methyltransferase from Mus with 38.46% of identity
• Blastx: tRNA (cytosine(34)-C(5))-methyltransferase from Mus with 38.46% of identity
• Eggnog: nOP2 Sun(COG0144)
• Kegg: Link to kegg annotations (28114)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019437635.1)
• Pfam: 16S rRNA methyltransferase RsmB/F (PF01189.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;