Ll_transcript_414235

• Id Trinity: TRINITY_DN49658_c0_g1_i4
• Name Transcript: Ll_transcript_414235
• Sequence: AGGCTTATCTTTACTTAAAGTTGGTGGAAGAATGGTTTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCCGTTGTTGCAGAGGTTTTGCGTAGG TGTGGAGGGTCAGTTGAACTTGTTGATGTCTCAAGTGAGCTTCCCCAACTTATTCGCCGGCCAGGTCTCAAGAGCTGGAAGGTGCATGACAAGGGCACTT GGTTAGTCTCTTGCAAAGATGTGCCTAAGTACCGTAGAAGTGTAATTCTTCCTGGTATGTTTCCTGCTGGCGGAAGCTATCAGGAACTTGTTGACAACAG TAATTGTAATGCTGACATGGGAGATAATATTGGTGTTTGTACCAATGGAAATTCTGAAGATGGTGTTCAAACAGTTGAGGAACCTTTGACTCATCAGGCT GCTGAGGAAGTTTGTGATTTCCCTTTAGAGCATTGCATGAGGATAGTGCCTCATGATCAAAATACCGGAGCCTTCTTTATTGCAGTACTGCTAAAAGTTG CTCCTCTGCCAGCAACTCAAGAAAAATCTAAAACAGAAATTGTTGAGCAAAATGTAGAACCGTTAAATCTGAGTCTTGAAGATGCTCGAGCACTGCAGAT TAACTCATCAGAAGGTGTACTTGAAGAAGTCTCCAAAGCAGTTCCAGAGGAAATTTTAAATGACACTGAACAAAATACAGAAGATTTAGAAGTTAGTCCT GTTGAAGAACAGGATTCCAAGGAAACTGAAGAGCCTCCCATTGTAGAAAACATGGCAAAGAAGGTTCCATCCAAAAGAAAGCTACAAATTCAAGGCAGAT GGAGAGGCGTTGACCCTGTTGTCTTTTTCAAAGATGAAGCGATTATTAATAGTATAAGGGCATTTTATGGCATCGGTGAGCATTTTCCTTTGGATGGTCA CCTTGTTACAAGAAACAGTGATGCTAGTCATGTGAAAAGAATTTACTATGTCTCCAAGTCAGTCAAGGATGTTCTTAAGTTGAACTTCTCTGTTGGGCAA CAACTTAAAATAACTTCTGTTGGCCTGAAGATGTTTGAAAGACAATCAGCACAAGAAGGTACCGATGCTCCATGTGCTTTCCGGATATCATCTGAAGGAT TGCCCCTTGTTCTCCCATACATAACCAAACAGATTTTACATGCATCTTCGGAAGACTTCAAGCGTCTTCTACAGGATAAAGATGTAAAGTTTGCAGATTT TGCTGATGCTAAGTTAGGTGAGAAGGCAGCAAACCTACTGCCAGGGTATTGTGTGGTAATTCTGGATAGAGGGAATAGATCTGCAACAGAGTACCCCAAA GTAGATGAGTCAACGATAGCCATTGGATGCTGGAGGGGTAGGGTGAGATTGACAGTGATGGTCACTGCAATGGATTGTCAAGAATTGCTTGCAAGGCTTT TAATACGTCTAGACCCAGAAAAGGGTGCTTCAGTGAATGTTGACAAATCCTCTAATAATGTGGGAGATGAACCATAGCCTGTACCTGAGATCAATAGTAT AACTGATGCTGATGTGAAAGCTGCAATTAGTTGAAAGTGACTGGTTAACAAATATTTATTGATACAGACATTTAAGTTATTGCATTTTATAGAAATGGTG ATTTTTTTCCTTCACCCATAATACGTTGCTGATGGAATTACTTGATTTGGTTAACCTCGTTATCATGTTCCTAGAACAAAGTCAGACTTCGGTTCATATT TGTATTGATATATTCTATAGCTTTGAAATGTTTACTCAATTTATTTCTGGGAAACTCTGTTGCTATGTGGATGCGGTTCAGAAATGG
• Tissue: pods
• Gene name: LI_gene_171155;
• Additional information: details;

Expression of Ll_transcript_414235

FPKM

• PAB: 2
• PNAB: 17.6
• PS1: 10.1
• PS2: 6.6
• PS3: 8.4
• PW1: 10.4
• PW2: 6.7
• PW3: 3.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_414235

• Blastp: tRNA (cytosine(34)-C(5))-methyltransferase from Gallus with 31.3% of identity
• Blastx: tRNA (cytosine(34)-C(5))-methyltransferase from Gallus with 33.59% of identity
• Eggnog: nOP2 Sun(COG0144)
• Kegg: Link to kegg annotations (420938)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464111.1)
• Pfam: 16S rRNA methyltransferase RsmB/F (PF01189.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;