Id Trinity | TRINITY_DN49658_c0_g2_i1 |
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Name Transcript | Ll_transcript_414231 |
Sequence | TGCATCGTTGATTAGATTTTTCCTTTTGCAAAATCAATAAAAAAAATTGTTCGTCAGTTTTTTTATAAATGCTATATGTCAATTATTTTATAAATATTAT ATGGCAACTTTTTTCCGACCACTTTAAAGTGATTTTTTTTCCATAAATTATTTGTACAATCAGGTTTATAATTAAGTTGACACCCTTTTTATAGAAAAAG AAGAACAACACTTTTTATATAATTTATGTGGTGCAAAAGTAGTTTAGTTATTAATAAGTCTACGATCATTGGACTACTAATATAAGGTTTCATTGGATCT TTAATGTTAAAGATTCGATTTTTATGAGCGACATTTATTGAGAATGAGAGGATGTATAAAAATAGAAAAACTAGGTCAAGTACTCACTGTCACCAGTCAC TACGCAAATAAATTGAAAATGGTTCAAATATAGGAGTTATATGGGTTTTGATTCAGCGCGGGAATGCTTCTCCTTGTTCTCCACCGGTTCACCACTAAGC GCGTACCTCACTGCTACCCACTCCGTCATCGAGTCTCCACTACCGCACTTTCCCAGATCACGCGCCACCCCCTTTTCCTCCCACCCGCCAACCTTTTCTC CGCTCACAATGACAATGATACCTATCGCGTCAACCTCACCATCACCGCTCTTTCACGTGCCGGAAACATCGACGCCGCTCGTCAACTGTTCGATGAAACG ACTCACAAAGACATCGTCACCTGGAACTCCATGCTTACTGCCTACTGGCAAAACGGCCTTCTAGAAAATGCCATATCCCTCTTTCACTCCATGCCTGCCA AAAACGTCGTGTCGTATAACTCCATTGTCACTGCCTGCGTCCAAAATGACATGCTCGATGATGCTTTTAGTTACTTTGTCTCAATTCCGGAGAAGAATGC CGCATCATACAATGCCATGATCTCTGGTTTTGTGAAATTTGGGCTCATGAGGGAAGCACAGAAGCTGTTTGAAGAAATGCCTCGTCCGAATGTTGTTTCA TATACCACGATGATTGATGGGTATGCGAGGGTGGAAGGTGGGATTGGGCGTGCGAGGGTGCTATTTGATGCGATGCCTCACAGGAACGAGGTTACTTGGA CAGTGATGATAAGTGGACTAGTAGAGAATGGACTTTGTGAGGAGGCATGGGAAGTGTTTGAGAGAATGCCGCAGAAGAATATTGTTGCTATGACTGCTAT GATCACGGGGTTTTGTAAAGAGGGAATGGTGGATAAGGCTAGGACTTTGTTTGAAGAGATTAGATGCAGGGATCGCGTTTCTTGGAATATAATGATCACA GGTTATGCCCAAAATGGGAGGGGGGAAGATGCACTGAATTTATTTTCACAGATGATCAGGGCCAGTATGCAACCAGATGACTTGACCTTTGTTTCACTTT TTACTGCATGTGCTAGTCTTGCATCACTTGAAGAAGGGAGACAGGTTTATGGTCTTGTAATTAAGCATGGCTTCGATTCAGATTTGTCTGTGAGTAATGC TTTGGTCACTATGTACAGCAAATGTGGTGGAGTTGTTGATTCCGAGTTAGCTTTTGGACAAATTTCCCATCCAGATATCGTTTCTTGGAACACTATCATT GCTGCATTTTCACAGCATGGTCTCTATGACAAAGCACGCTCCTACTTTGACCAGATGCTAACAGTCGGAGTTCAACCTGATGGTATAACTTTTCTGGGTT TGTTATCTGCCTGTTGTCGTGCCGGAAAGGTTGATGAGAGCATGAGTCTGTTTAATTTGATGATCCATAATTATGATATTCCACCAAGGTCTGAACACTA TGCTTGCTTAGTTGACATAATGAGTCGAGCTGGCCAGCTGCAGAGAGCATACAAAATAATCCAGGAGATGCCTTTAGAAGCAGATTCTAGCATCTGGAGC GCTTTGCTTGCAGCCTGTAGTGTTCATTTAAATGTGAAATTGGGAGAACTGGCAGCAAGAAAAATTTTAAATTTGGATCATCATAATTCTGGTGCTTATG TTATGTTGTCTAATATATATGCTGCTGCCGGCAAGTGGAAGGATGTGAATAGAGTCAGGGTTTTGATGAAAGAGCAAGGAGTTAAGAAACAAACAGCTTA TAGTTGGATGCAGATTGGAAACAAAATCCATTGTTTTGCTGGAGGGGATCCATCACATCCAAATACTAGTGATATCCATGTTGCTTTAGGGTGGATTACA TTACATATGAAGGTGAAGATTGACACTGAGGAAGTTTTCTTGTAGTGTTCATTTAAATGTGAAATTGGGGGACTGGCACCTAGAAAAATATTGAATTTGG ATTTTCAAAATTCCGGTGCTTATGTTGTCTAATATAATGCTGCTGGTTGCTAGTGGAAAAATGTCAATGGAGTTTAGGTTCGATTGAAAGAGCAAGTAGT TAAGAAACATTCAGCTTATTGTTGGGTTAATTTATGCCAACCATTCTGGCAAGGGAAGATACAGATTTTATTGAGAGTCAAGGGAAATCATTTTGAACTT GCAAGCCTCACAATTTGTGCCAAATGTAGCTTGAACTCCCAAAGATATAAAGCTGAGAATATGAAAATTCACGCTAAGTGTTCAATCTAATATTAAGAGG CTAAGAAAATCTGAATGGTTGACACCATTGATGTTGAATTGGTGTGGCCGATATTCAGTCCTGGGATTATTTCCAGCCATAATTACATATGCACTATGCT GATATATGCCAGTTGAGATCTTCATAAAAGCTTGAACATGGATTCCATCAGAAGCTGTTGAATTCTGCATGTGATTCAGCTTGTGGCATCAAATGTAGCG GGGATTAAGTTTGTTTAAAATGATTACAATTTTGGCCATGCAGGTATATGACAAGGGAACATGGTTGGTCTCTTGCAAAGATGTGCCTAAGTACCTCAAA AGTGTAACTCTTCCTGTTATGTTTCCTTCTGGCGGAAGCTGTCAGGACCTTTTTGACAGTAACTGTAATGCTTACATGAGAGATGATATTAGTATTTTTA CCAATGGGAATTCTGAAAATGGTGTTCAAACAGTTGATGATCCTGTGTGTCATCAGGCTGCTGAGGAGGTTTCTGATTTCCCTTTAGAGTGTTGCATGAG GATAGTGCCTCATGATCAGAACACTGGAGCCTTCTTATTGCTGTATCGCAAAAAGTTTCTCATCTGCCAGGGACCATATGGGCTACAGTGTCCCCCAAAG TGGATGAGTCAACTATGGCTATTGGATGCTAGAGGGGTGGGATGAGATTGATAGTGATGCTTACTACAATGGACTCTCAAAAACTACTTGAAAGGCTTTG AATACATCTAGACTCAGAAAAGGGTTATTCCGTGCACGTGGAAGAATCCTCTAATAATGTGGGAGGTGAAGTACAGCGTGTACCTGAGTTCAACGGTAAA AATGATGATGATGTGAAAGCTCCTATGAGTTCGAAGTGACTAGTTAACATATTTATTCATCAGTTGTAACAGATATTTAAGCTATTGCATTATAGAAATG ATTTTTTCCTTCACCCATGATACGTTAGTGATAAATTTGCTTGTTTTTGTTAACCGACTACGTACTTCGGGATGGATTGGTGTGGTTCC BLAST |
Tissue | pods |
Gene name | LI_gene_171156; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_414231
Blastp | Pentatricopeptide repeat-containing protein At4g02750 from Arabidopsis with 38.31% of identity |
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Blastx | Pentatricopeptide repeat-containing protein At4g02750 from Arabidopsis with 38.91% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT4G02750) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019459705.1) |
Pfam | PPR repeat (PF01535.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |