Ll_transcript_414232

• Id Trinity: TRINITY_DN49658_c0_g2_i2
• Name Transcript: Ll_transcript_414232
• Sequence: CATCGTTGATTAGATTTTTCCATTTGCAAAATCAATAAAAAAAATTGTTCGTCAGTTTTTTTATAAATGCTATATGTCAATTATTTTATAAATATTATAT GGCAACTTTTTTCCGACCACTTTAAAGTGATTTTTTTTCCATAAATTATTTGTACAATCAGGTTTATAATTAAGTTGACACCCTTTTTATAGAAAAAGAA GAACAACACTTTTTATATAATTTATGTGGTGCAAAAGTAGTTTAGTTATTAATAAGTCTACGATCATTGGACTACTAATATAAGGTTTCATTGGATCTTT AATGTTAAAGATTCGATTTTTATGAGCGACATTTATTGAGAATGAGAGGATGTATAAAAATAGAAAAACTAGGTCAAGTACTCACTGTCACCAGTCACTA CGCAAATAAATTGAAAATGGTTCAAATATAGGAGTTATATGGGTTTTGATTCAGCGCGGGAATGCTTCTCCTTGTTCTCCACCGGTTCACCACTAAGCGC GTACCTCACTGCTACCCACTCCGTCATCGAGTCTCCACTACCGCACTTTCCCAGATCACGCGCCACCCCCTTTTCCTCCCACCCGCCAACCTTTTCTCCG CTCACAATGACAATGATACCTATCGCGTCAACCTCACCATCACCGCTCTTTCACGTGCCGGAAACATCGACGCCGCTCGTCAACTGTTCGATGAAACGAC TCACAAAGACATCGTCACCTGGAACTCCATGCTTACTGCCTACTGGCAAAACGGCCTTCTAGAAAATGCCATATCCCTCTTTCACTCCATGCCTGCCAAA AACGTCGTGTCGTATAACTCCATTGTCACTGCCTGCGTCCAAAATGACATGCTCGATGATGCTTTTAGTTACTTTGTCTCAATTCCGGAGAAGAATGCCG CATCATACAATGCCATGATCTCTGGTTTTGTGAAATTTGGGCTCATGAGGGAAGCACAGAAGCTGTTTGAAGAAATGCCTCGTCCGAATGTTGTTTCATA TACCACGATGATTGATGGGTATGCGAGGGTGGAAGGTGGGATTGGGCGTGCGAGGGTGCTATTTGATGCGATGCCTCACAGGAACGAGGTTACTTGGACA GTGATGATAAGTGGACTAGTAGAGAATGGACTTTGTGAGGAGGCATGGGAAGTGTTTGAGAGAATGCCGCAGAAGAATATTGTTGCTATGACTGCTATGA TCACGGGGTTTTGTAAAGAGGGAATGGTGGATAAGGCTAGGACTTTGTTTGAAGAGATTAGATGCAGGGATCGCGTTTCTTGGAATATAATGATCACAGG TTATGCCCAAAATGGGAGGGGGGAAGATGCACTGAATTTATTTTCACAGATGATCAGGGCCAGTATGCAACCAGATGACTTGACCTTTGTTTCACTTTTT ACTGCATGTGCTAGTCTTGCATCACTTGAAGAAGGGAGACAGGTTTATGGTCTTGTAATTAAGCATGGCTTCGATTCAGATTTGTCTGTGAGTAATGCTT TGGTCACTATGTACAGCAAATGTGGTGGAGTTGTTGATTCCGAGTTAGCTTTTGGACAAATTTCCCATCCAGATATCGTTTCTTGGAACACTATCATTGC TGCATTTTCACAGCATGGTCTCTATGACAAAGCACGCTCCTACTTTGACCAGATGCTAACAGTCGGAGTTCAACCTGATGGTATAACTTTTCTGGGTTTG TTATCTGCCTGTTGTCGTGCCGGAAAGGTTGATGAGAGCATGAGTCTGTTTAATTTGATGATCCATAATTATGATATTCCACCAAGGTCTGAACACTATG CTTGCTTAGTTGACATAATGAGTCGAGCTGGCCAGCTGCAGAGAGCATACAAAATAATCCAGGAGATGCCTTTAGAAGCAGATTCTAGCATCTGGAGCGC TTTGCTTGCAGCCTGTAGTGTTCATTTAAATGTGAAATTGGGAGAACTGGCAGCAAGAAAAATTTTAAATTTGGATCATCATAATTCTGGTGCTTATGTT ATGTTGTCTAATATATATGCTGCTGCCGGCAAGTGGAAGGATGTGAATAGAGTCAGGGTTTTGATGAAAGAGCAAGGAGTTAAGAAACAAACAGCTTATA GTTGGATGCAGATTGGAAACAAAATCCATTGTTTTGCTGGAGGGGATCCATCACATCCAAATACTAGTGATATCCATGTTGCTTTAGGGTGGATTACATT ACATATGAAGGTGAAGATTGACACTGAGGAAGTTTTCTTGTAGTGTTCATTTAAATGTGAAATTGGGGGACTGGCACCTAGAAAAATATTGAATTTGGAT TTTCAAAATTCCGGTGCTTATGTTGTCTAATATAATGCTGCTGGTTGCTAGTGGAAAAATGTCAATGGAGTTTAGGTTCGATTGAAAGAGCAAGTAGTTA AGAAACATTCAGCTTATTGTTGGGTTAATTTATGCCAACCATTCTGGCAAGGGAAGATACAGATTTTATTGAGAGTCAAGGGAAATCATTTTGAACTTGC AAGCCTCACAATTTGTGCCAAATGTAGCTTGAACTCCCAAAGATATAAAGCTGAGAATATGAAAATTCACGCTAAGTGTTCAATCTAATATTAAGAGGCT AAGAAAATCTGAATGGTTGACACCATTGATGTTGAATTGGTGTGGCCGATATTCAGTCCTGGGATTATTTCCAGCCATAATTACATATGCACTATGCTGA TATATGCCAGTTGAGATCTTCATAAAAGGTATATGACAAGGGAACATGGTTGGTCTCTTGCAAAGATGTGCCTAAGTACCTCAAAAGTGTAACTCTTCCT GTTATGTTTCCTTCTGGCGGAAGCTGTCAGGACCTTTTTGACAGTAACTGTAATGCTTACATGAGAGATGATATTAGTATTTTTACCAATGGGAATTCTG AAAATGGTGTTCAAACAGTTGATGATCCTGTGTGTCATCAGGCTGCTGAGGAGGTTTCTGATTTCCCTTTAGAGTGTTGCATGAGGATAGTGCCTCATGA TCAGAACACTGGAGCCTTCTTATTGCTGTATCGCAAAAAGTTTCTCATCTGCCAGGGACCATATGGGCTACAGTGTCCCCCAAAGTGGATGAGTCAACTA TGGCTATTGGATGCTAGAGGGGTGGGATGAGATTGATAGTGATGCTTACTACAATGGACTCTCAAAAACTACTTGAAAGGCTTTGAATACATCTAGACTC AGAAAAGGGTTATTCCGTGCACGTGGAAGAATCCTCTAATAATGTGGGAGGTGAAGTACAGCGTGTACCTGAGTTCAACGGTAAAAATGATGATGATGTG AAAGCTCCTATGAGTTCGAAGTGACTAGTTAACATATTTATTCATCAGTTGTAACAGATATTTAAGCTATTGCATTATAGAAATGATTTTTTCCTTCACC CATGATACGTTAGTGATAAATTTGCTTGTTTTTGTTAACCGACTACGTACTTCGGGATGGATTGGTGTGGTTCC
• Tissue: pods
• Gene name: LI_gene_171156;
• Additional information: details;

Expression of Ll_transcript_414232

FPKM

• PAB: 0.1
• PNAB: 0.6
• PS1: 0.6
• PS2: 0.1
• PS3: 0.2
• PW1: 0
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_414232

• Blastp: Pentatricopeptide repeat-containing protein At4g02750 from Arabidopsis with 38.31% of identity
• Blastx: Pentatricopeptide repeat-containing protein At4g02750 from Arabidopsis with 38.91% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT4G02750)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019459705.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;