Ll_transcript_416279

• Id Trinity: TRINITY_DN49659_c0_g1_i1
• Name Transcript: Ll_transcript_416279
• Sequence: GCCAAACAACACAGTTAAACTCAGAACTCAAATGAGATAAGAGTTGTTGAGTTTAGGAGCCTCTAGTAACAGAAGAAAGAAGAAAAAAAACAGAACTTTT CAGCACCCCACTTATCTGCTTCAGCTACAAGGGAACCCTCAACTACAATAAACGTGTTACATGTTTGCCACTCATTCATAGTCATGGAACATCACCGGTA CAAGAGCAACCAAACAAAATCGAGCTCTATTAATCAATCTCCATGTCTTGTCTGCAAAGGGAACAACAGTTGTAAAATTGTTTATTCAAAAACAAAGTCA ATGCATATTTTGATCAAAAGGGGGAAGCCACAGGAAGCCGAGGCCATCTTCAATAGATTAACAGAAGAAGGACATAGGCCAACTCTTGTAACATACGTAA CTCTTGTGTCCGCTTTGTCCAGCCAGAAGGATTTCAAGTCCATTTCTCTACTTCTTTCTAAGGTTGAAGAGGGTGGCATGAAGCCTGATGCGAATCTTTT CGATGCCATGATCTATGCTTTTGCTGATTCTGGCAAGGTAGACGAAGCCATGAAAATCTTTCAAAAAATGAAGGAGCGTGATTGTACACCTATAGTTCGT ACATATAACACCCTCATCAGAGGATTTGGAAGGGTTGGAAGACCTTATGAATCTATGAAATTGCTAGAGATGATGGAGCAGGAAATTTTTTTGAAACCTA ATGACAGAACATATAATCATCTCGTCCAAGCCTTGTGTACAAATAAGAAACTAGAAGAGGCATGGAATGTCGTGCATAAGATGGAGGCCTCTGGCATGCA ACCTGATGTTGTTACTTACAACATGCTGGCAACGGCTTATTCTCGTTATGGCGAGACTGAGAAAGCGGAAAGGTTGATATTAATTATGCAGGACAAAGAA GTGAAGCCTGACGAGCAAACTTGTGGTATCATAGTAAGTGGTTATTGCAAGGAAGGGAATATGACAGCTGCCTTAAAGTTTCTATACAGAATGAAGGAAC TCGGTGTGCATCCAAATGTTATAGTTTTCAACTTTCTTATCAAAGGATATTTAGACAAAACTGACATGGATGGAGTAGCTGAGGTTTCGAAATTGATGAA TGAATCCGGGGTCAAGCCAAATGTTGTCACTTACAGCATACTGGCAACGGCTTATTCTCAGAATGGTGAGACTGAGAGAGCTGAAAGGTTGATACTAAAT ATGCAGGACAACAAAGTGCGGCCTGATGAACAAACTTGTGGCATCATAGTAAGTGGTTATTGTAAGGAAGGAAATATGACGAATGCTTTGAGGTTTCTAT ACCGAATGAAGGATCTGAGATTGCGTCCAAATGTTGTAATTCTAACCTCTCTCGTCAAAGGATATTTAGACATTAAAGATCCAAATGGAGTTGCTGAGGT GCTGACATTGATGAAGGAATTTGGGATCAAACCAGATATGATAACATATAGCATCATCATGAATGCATGGAGTTCAGAAGGACTTATGGAGAATTGCGAG GAGCTTTTCAATGAAATGGTGATGGCTGGGATAGAACCTGACATCCATGCCTACAGCATCCTTGCAAAAGGCTATGTATGTGCTAGACAGCCGAATAAAG CTGAGGCGCTTTTGAGTTCTATGAGCAAATATGGTGTAAAACCAAATGTTGTGATTTTTGACACTATCATCAGTGGATGGTGTTCTGTCGGCAAAATGGA TGATGCTTTGAAACTTCATGAGAAAATGCATGAAATGGGAACTCCCTCAGGTTTGAAAACATATGAAACTTTAATATGCGGGTACGGAAAAGCAAAACAG CCATGGAAAGCAGAAGAATTACTTGTGACTATGGAAGAGAAGGGTATTCATCCTGAAACAACTACCATGCAACTGGTTGCTGATGCTTGGCGTGCCACTG GTTCGTTTATTGATGCTGATCGAATTCTAAATGATACAAAAGCAGATGAAAATTTCAGAATCCACAAGGTAGCAGTACAGAACATGGAGAAGACATCTAA GACACAGAGAAATAGTGCTTCACCATCTAATTTTGTACTACCAATAAACCCAGAAAGTGCTGCTAATGGAAGCATAAGAAGCCGTAGGAAGATGATAGTC AAAGCATATGACAGTATGCAGAATGCTGCTGCCATTTCCATAGGTTCAGGTTCATTTAGGGTACGGCCTTTGATTATATGTAGGCAACAAACTCAAAATC AATTTGTCAGGCCTTTTATTGATGGTTGTAGAAAAAGTGGTGCCAATATACTTAGGAGCTGACTTTCAGCTGAATGATGTGATTTAACAAAAACAACAAT GATTCTTGAACTACAATTTTGGGACATCATAGAAGACATATGTGGTCTTCCTTCAAAATTTGATAGTGGAGTTGCATAGGGAATCTAAAATGGCAAGAGA ATGTAATAGCTTTGTATGATGTATTAGAGAAAGTTGCTGGATTCTGATATCAAATAATGTAACTCAAAACAAAATTCTTGTGCATGGATTTATATGCTAA TGAAAATGTACAACAAAATGCCCATCTGAGTCAC
• Tissue: pods
• Gene name: LI_gene_171163;
• Additional information: details;

Expression of Ll_transcript_416279

FPKM

• PAB: 1.1
• PNAB: 3.7
• PS1: 3.7
• PS2: 2.6
• PS3: 3.7
• PW1: 3.4
• PW2: 3.1
• PW3: 3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_416279

• Blastp: Pentatricopeptide repeat-containing protein At5g21222 from Arabidopsis with 45% of identity
• Blastx: Pentatricopeptide repeat-containing protein At5g21222 from Arabidopsis with 45% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G21222)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019458475.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;