| Id Trinity | TRINITY_DN49659_c0_g2_i5 |
|---|---|
| Name Transcript | Ll_transcript_416285 |
| Sequence | CCTCAAGTAATCTTCTCATCTTTTAGTCCTTTTTTATGATAGCCTCAAAAAAGTAAGCGGAAATCTTATTATGATAAATATTTGTGGATAAGAATCCACA TACACATAATCCACTAAACTACAATACACTTAAACTTCATTCTTCTTCTCTCTAGGATTCACTCCAGTTACATGCATAACACTTTTAAATATGTCCAACT TCTCAACTGAGCCAGGATCTAATTCTGGCTAGGGTAGAAAGGTAGTTTGTTGAGGCTATCAGAAGCAGCGAAGATAGAATTCTAGGAATCTGATCAAGTC TTTTGATCATCATGGATAGCAGACAAAAGGGAGCCCTCATGAACAATAAAAGTGTGGAAGATGTATCAGTTGTGGTATTGTGAATTATATAACTTTTTTT CTCATGTGACGTTAGAAATTTATCTGAGTAGTTAACTGCATTAACTTTTAAGTCTATAACCTATAATTAGCCACAACTATCACTTTGATATTGATAATTC AGACATCTATAAATTTCTATGTCATTCTACTAGTTTATAGGATTCTAAATAATGTCATTTGACAAAGATAACCATCAAAATCTATTGACACATTCTCCAT AAATATTTGCTGAAGAGTCTAGATAACTTAATTGTCGACTTTTCGCAATTACGCCACAGGAACTGCAGCAATACAAGAACCAGAGAAAAACAAACTCTAG TCCAGAAGAGACGGTCAATCAATCCCGCTGTCTTATCTGCACAGGGAAGAATAGTTGTGAAACAGTTCATTCAAGAACAAAGCTGATGAATACTTTGATT GGAAAGGGGAAGCCACATGAAGCTCAGGCCATCTTTAATAGTTTAACAGAAGAAGGACATAGGCCGACTCTTATAACATACACAACTCTTGTGGCTGCCC TAACCCGTCAGAAGCGCTTCAAGTCCATTCCTTCACTTCTTTCTAAAGTTGAAGAAAATGGAATGAAGCCTGATTCGATACTTTTCAATGCTATAATCAA TGCTTTTTCTGATTCTGGTAAGGTAGATGAAGCTATGAAAATCTTTCAGAAAATGAAGGAATATGGATGTAAACCTACAACTAGTACTTTTAACACTCTC ATTAAAGGTTTTGGACTTGCTGGAAGGCCTTATGAATCGATGAAATTGCTAGAGATGATGGGCCAAGAAGAGAAAGTGAAACCGAATGAGAGAACATATA ATATTCTTATTCAAGCGTTTTGTACCACGAAGAAACTGGAAGAGACATGGAGTATTTTACACAAGATGGTGGCTTCTGGCCTGCGACCTGATGTTGTCAC GTACAACACGCTGGCAAGGGCTTATGCTCAGAATGGCGAGACAGAAAAGGCTGAAAGGTTGATATTAAAAATGCAGTACAACAAATTGAAGCCTAATGAA AGAACTTGTGGTATCATAATAAGTGGTTATTGCAAGGAACGCAATATGACAGATGCCTTGAGATTTCTATACAAAATGAAGGAGCTTGGAGTGCATCCAA ATCCAGTAGTTTTCAACTCTCTTATCAAAGGATATCTAGATACTACTGACACGGATGGTGTAGATGAGGCACTGACATTAATGGAAGAATTTGGGATCAA ACCAGATGTAGTCACATTCAGCACCATCATGAATGCATGGAGTTCAGCAGGGCTAATGAGCAATTGTGAAGAGATATTCAATGACATGGTCAAGGGTGGG ATAGAACCTGACATCCATACTTACAGCATCCTTGCAAAAGGCTACGTTCGTTCTGGACAGACACGAAAAGCGGAGGAGCTTATCACTTCCATGAACAAAT ATGGTGTACAACCAAATGTTGTGATCTTTACTACCATAATCAGTGGATGGTGTACCGAAGGCAAAATGGATCGCGCTATTATACTTTACGAGAAAATGCA TGAAATGGGAGTTACCCCGAATTTGAAAACCTGTGAAACCTTAATATGGGGATATGGAGAAGCAAAACAACCATGGAAAGCAGAAGAATTACTTGTTGCT ATGGAAGAGAAGGGTGTTTCTCCTGAAATGACCACTATGCAACTGGTTTCTGATGCTTGGCGCTCTGTTGGTTTATTTACAGAAGCCAACAGAATTATAA ATGATTCACAAGAAGAATCTGAGCTAGACCAAAACTTAGAAAATGACAATACACCGGTGCAAAGCTTGGAGACT BLAST |
| Tissue | pods |
| Gene name | LI_gene_171164; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_416285
| Blastp | Pentatricopeptide repeat-containing protein At5g21222 from Arabidopsis with 60.56% of identity |
|---|---|
| Blastx | Pentatricopeptide repeat-containing protein At5g21222 from Arabidopsis with 60.46% of identity |
| Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
| Kegg | Link to kegg annotations (AT5G21222) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019446330.1) |
| Pfam | Pentatricopeptide repeat domain (PF13812.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |