Ll_transcript_416079

• Id Trinity: TRINITY_DN49660_c0_g1_i6
• Name Transcript: Ll_transcript_416079
• Sequence: CCACCACATACACGCCTTTGGAACGTTGAAGTGGGTTAACCACCTATCTAATGTAGGTGTATATGGGCGAAAAGACAATCTAGGACTCGGGCGGGATCTC TTTCTTTCTCTTTCCAATTTTTCAATCACCCACCATCGTTCTCAGACTTTCTCCCACCATATTCATTTCGCTTCCTTCATTTTCGTTTGGATCTGAAATC AAAACATGTTTCTATTCGATTGGTTCTATGGCATTCTCGCTTCTCTAGGTCTTTGGCAAAAAGAAGCAAAGATCCTTTTCCTCGGTCTCGATAATGCCGG AAAGACCACCCTTCTTCACATGCTCAAAGACGAGAGATTAGTTCAACACCAACCAACCCAACACCCTACCTCAGAGGAATTGAGCATTGGGAAGATCAAG TTTAAAGCTTTTGATTTGGGTGGTCATCAAGTTGCTCGTAGAGTCTGGAAGGATTATTATGCTAAGGTCCATTCTCCTTATGTTTATCAATTTTTGTATT GTCCTTTTTTCAATCATAAATTCCAATAATATGCACTTTATATGATTTTTAGTTAATGAATAGTTGGATTCCCTTCATAATAGGGATTATTTGGTTGATA TTTACTTTCTGTAATATAGTATAGATTGTATATACTTATCATGTTTCTTTTTGTTTGTGCCTTGGTGCAGAACTTATTTTCCTTGATTGTTATCAATGTG ATTTTTTGTTCAACATAATGACAACAATAAGCTTAATGTGTTTTTTTTAGTTTCTGAACATTCGGATTTCTATTATGCATTGTGTGTATTAGGGTAGGGG GCTACTGCTTTGTAATTGGCCCACTTAGTTGTCGATGTTACCATTTAATTCCTCTGCTAAATCATATAAAAGTGCAAAAAATTTCAACTGTTTTTGGTTA GTGCTTTAGTGCAGATTTACTTTTAGGTAGCAGTGATGGAATATTGTTCTTGATCTTGTGAGATTATTATTCTTTGAAATGTGTTTTTTAATACAAGGTC TTTGAGAGAGGTTGATCTTTCTTTCATTATGATGCCAATTGCTTTTGATACGGCTGTTGTGACCTCTCTCTGAACTCTAGTTGGTATATCCATTATTGTG TACTTCCATCTTGGAGTGCTAGCTTTTAATTAGTTTAGTTATCTTCCTTTTTTGTGTGATATTTTGTTGATGTTCTGGAAACCTTTGAAAATTCCTAGCA TATTTATCCTAGATTATGGTTGTGTATAAGTAGTATAACTCTGTCTAATCCATTATTGTTGTTGAGTGTATCGGGACACCGAAACTTACATCTGGCTTCA TTTTCCTTTGTGTATCTACTTCAGCAACTCATGCCTTTGTAATCCCAGTTAAAGCCTTTCGTATTGATCTGATCAATGGGAGACAATTGTTAGCAGTGGA AGTTTCATTGATAGCACTCCTGTTTACCCAGCGCAACGTTTTCTTCTAGTGACTTTCCTAACATGTCCAATTTTTACCTGATGAAATAGAAAGGCAATAG CACACACAAGAGTGAGAGGAACACATAAGAAATGTGTAGATCTTTGAAAGAGCTAGTTATTAGATTTTCTATTGAATTGGTACATCCTATTGAAAAATTA GAAGAAGCGACTCTTAATTGATATGCTCTTGCATCTTGAGGGAGAGGAGAGGTATTCATTTAAATATGCTTGAAGTGTAAGTTTGGATGCATCTCCTATC AACACCAATTCAAGTGTAAATTTATGGCACTTTGCCTTTGACATGATTCGTATTCCATAGTGCTGTAAATTATTGAGGTTTATGGTTTCTTTAGGAATCG TGTTTCACTTTATTCCCCTGGTTTAATATACTCCTATTTATAAAATATGACTCCTATGCTGGATGTTACTTTATAATTCACAAATTGACTTTCCAGGTGG ATGCTGTAGTTTACCTGGTTGATTCCTATGACAAAGAGAGGTTTGCAGAATCGAAGAAGGAGCTTGATGCCTTGCTTTCAGATGAATCACTGGCGAATGT TCCATTTCTCGTGCTAGGCAACAAGATCGACATTCCATATGCTGCTTCCGAAGAAGAGCTACGATATCATCTAGGCCTGACCAATTTCACCACAGGTAAG GGAAAGATCAATCTTACAGAGTCCAACCTTCGGCCTCTTGAAGTGTTCATGTGCAGTGTTGTCCGCAAGATGGGATATGGTGATGGCTTCAAGTGGGTTT CTCAATATATCAAGTAGAGTCCAGCATCACTTTTTGTTTGTTCCCCTCTTTCCTTTCTTAAGTAGCACATGGCCTTCAGTTACATCAAAAGTGGTTCTAT CTTTGTTTTTGCTTTCGATGATTGGATTTTGATACAAAAGTGCGGTAATATAATATCCCTATGTCCTACAATTTGTCCCTTTAGAGATTCTTTTTTGTGG GGTGGGGATACTATGTTGAAATACTGGATTGTGTCATAGGGTGTTATGACTGGGGAGAAGCAAAAAGTTACAAATAAATTTGGAAAAGTCTTATTCCACA TCCACCCTGGTTGATTTTTGACAAATGTGGAAATAAGAAATGACATGTATCCTAATCATCTGATAGCATGACAATGAAAAATTGAAATGAAATGACTGCC AAAGCAATTGCTACTTCTGCTAAAGTAACTTCATATATGATTTATGAACTGTATCATGCTCAATCCCCCCTGAAAATTCGGTGAATGATCTTGCATAGCG ACATTAGCTGCAGGAAACTAAAACGGCGGGCGTTTTTTTCGTCTAGTGACACAACTTGAATGTTATGCAGACATGTTTTTTATACCAAGGGTGTCTTCAG GCCACAACTATCTATCAATTGTGTTTGGTGATGCCTTGTTCTACAAATTGTGCTGGGTGATGCCCTGTCTGTGGAATGCACACATTTTATAAATGCTATT AATGAAATAAATTTTGCAAACATTTTAGTAGGAATATATATATTTTTTCTAATTTTTTAAGGTCTTAGTGGATCTTATGAAATGAAAT
• Tissue: pods
• Gene name: LI_gene_171166;
• Additional information: details;

Expression of Ll_transcript_416079

FPKM

• PAB: 0.8
• PNAB: 0.5
• PS1: 0.7
• PS2: 0.3
• PS3: 0.4
• PW1: 0.1
• PW2: 0.4
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_416079

• Blastp: GTP-binding protein SAR1B from Arabidopsis with 96.67% of identity
• Blastx: GTP-binding protein SAR1A from Arabidopsis with 89.72% of identity
• Eggnog: Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23 24 complex. These SEC23 24-SAR1 prebudding intermediates are then collected by the SEC13 31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits (By similarity)(ENOG410YIKI)
• Kegg: Link to kegg annotations (AT1G56330)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464141.1)
• Pfam: ADP-ribosylation factor family (PF00025.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;