Id Trinity | TRINITY_DN49671_c0_g1_i18 |
---|---|
Name Transcript | Ll_transcript_416404 |
Sequence | TAAGATTTTAATATAACTTTAAACAAAGCCACTCTTAAAAATGCTTCCCTGGATCCGGTGCATCCCACCTACACTCTTCTCTCTCCGATAACCTCTCCTT TTTTAACGGTGTTACTGACGGCGGAGCCTCCTTCTCTCCTCGCCGGAGCATGCGACGGATCTGCCATCTCTTAACTTCATGAAAATCTCAGAACATGCTC ATCTCTTCTGGATCTAGACTCTGTTTCTACGTTTTAGTGGTTCCCGTTGTTTATGGATCCGGGTTCTAGAAGCTTCCATTTTCATCATTTTTATTATTTA TTGAGATTTTGCTGCTTAGGGTGTAAAATTTTCAGCTGATTTGGTTCGATTGATCTGTTCCTTCTTCGCTTCAATTTTGTAGGTGTTGTTTCTTTTCTTT TTCTAGTTTTTAATAGAAAGAAAAGAAATTTATGTTTCATTGTTCTGCATTTGAGTTCTTCTTAGATCACCCATGCTATGATACCAGCAAATAGCTTTAA CTCATAATTCTCAACATATAAAGTTTTCAGCTTTTACATAGCTTATTGTTCTGCAGCTTCTGCTGTTATGTTCTTGATGTGTGGCAAAATGTGATTGCTT TTTGTCATGACTGTGATTTTGAGCATGTGTAAGAGATTGGAAAGGAAACTTTGCAAAATTGTCAAGGATTTAGGGGAAGTTTTGATCTAAAAGAAATAGT TATTTTTTTTAATATTAACTGATTATGAATGAGACCCAATAGTTTATGATGGGATTGTAATATTTTGTAGAATCAGGGGTGTGGTATTGGTATATACCTG TTGGGGGTACTCCACTTAATGCGAATTGATTTTAAGATGCATTGAATCTAGAGTTACATCTGCATACTATTGAGTTGCATAGGAAGGACTCACATTCTTA TAAGCATATTTTGTCATCCGTAGTAGAGAATCACCTCAATTTTGTTTTAATGGTTGCAGTTTTTGTGGTGAAAGGAAGATTGGTATGCTGTACAAAAATG TCATTGAAAAGCATACTACAAGAACTGAAGGAGATAAGGGGTGGTATTGGTAGCATATCAAAGCGAGGTGCACAAAGCAAGCCTTGGCCCAGTCGTACGA AGTCATACATAGTTCCTGATGTCACAGTAGCTCCACTTGAACCTATTCCGCAAGGACCATGGGCAAACCTACCTCCTGAGTTGCTTCTGGACATAATCCG GAGGGTTGAAGAAAGTGAGACGTCCTGGCCTTCACGCACTGTCATTGTTTCTTGTGCTTCAGTGTGTAAATCTTGGAGGGTCGTTACAAAAGAGACTGTC AAGACTCCTGAGCAATGTGGAAGGCTCACATTTCCCATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCAATCCAGTGCTTTATCAGGAGGAACAGGG AAACTTCTACATTTCTATTGTACTTCGGTCTGGTGCCATGTAAGTTTCTTTCATTGCTGACAATTGGTGTCAATTTATAGTTATGACTTTGAATGTTGAA CTGCAAGTTTCTTACTTTAAATGTGTGGCTTTCTTTAATTATCAGTATCATTTTAAATGTGTCGCTTTCTTTATTTATCAATATCATTCATATACGAAGG TCATCATCTTTATTTATCAATATCATTCATATACGAAGGTCATCATCTTCCTCTTCATAACTCTTTTCTCAAATGACAAATGGATTACTTGGTATCCATA TTATGTTTTATACCCATATATCGGGAAGCAAAGCGAACTTTGCCCTACTGTTTGCATAAAATCTTTATTTATATAAACTATTTGGATGAGACATAAATAA GCAAAGTCTATGGATATATCCAAAGCTAGTTTTTGGCCTTGTTTTTCTCCTTTCAAAGATCTTCAAACCATGTTATTCTCTTATTGAATTTTGATTGGAT GAGCTCATAAATGACACTTAAGAAGCTTGTTTTGTTTTGATTTTACATATACAGCGGAGAATGAAACTGATAAATTGTTATTAGCTGCGAAAAAGATAAG AAAGGCAACAGGCACAGACTTTGTCATATCTTTGGTTTCAGATGAGTTTTCTCCATCCAGCAGCGCATATGTTGGAAAACTGAGGTCTAATTTTTTGGGG ACCAAGTTCACTATATATGACAGCCAACCTCCATGTGAAGCTGGAATTCAATCAAATAGCCGTTCAAATAGGAGATTTCACTCTAAACAGGTGTCTCCAA GATTTCCAGCATGTAACCATGTTGTTAGCACCATAGCTTATGAACTCAATGTTCTCCGTACAAGAGGGCCAAGAAGAATGCACTGCACCATGAACTCCAT ATCTATCTCAGCTATTCAGGAAGGGGGCAGTGCCCCAACTCCCACTTCTTTACCTCAAAGTATTGATAGACATTTTTCTCCCTCACCAGCATTGAAAGGA AAACGTCCGGTTACAGATTTAAATTCTGAAAGCCTCTCAGAGCTACCGATGCAAAACCAAGGCTCGGTTGAGCCTCTTGTACTTAAAAACAAGGTTCCCA GATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTCAAGGGTCGCGTTACAGTGGCTTCTGTTAAAAACTTTCAACTCGTGGCTGCTGTAGATCCATC GCACAACGTTTCTGCTTCAGAACAAGAGAAGGTTATCTTGCAGTTTGGAAAGATCGGAAAAGACATATTTACCATGGATTACCTTTATCCACTCTCGGCC TTCCAAGCTTTTGCAATATGCTTAAGCAGCTTCGATACAAAACCCGCATGTGAATGAGACCGATGTATCTGGATCATCATCTTCTGCCGGTTTGTTTCAT ATATATAATGTGTAATATGCTAGGAACAGTTCATCAGGCATGGTTACATGCAAACGACAATCTTAGCTCTTCAGTCATTAGTATCATCTCCCTTATGTTA GTTGATATTGGTATTTAACATGTATGTTGTTTCATAACCCTGCAACTAAAATTAAATTAAAGTTAGCGAAATTTCAATTTCATATAATATATAGTTGCAG GGTATTCCTGATCTATGAATCTCTTGGTTATTTTCAAGTAGATATCATTTTCTGATGATTAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_171234; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_416404
Blastp | Tubby-like F-box protein 2 from Arabidopsis with 67.11% of identity |
---|---|
Blastx | Tubby-like F-box protein 5 from Oryza sativa with 66.43% of identity |
Eggnog | tubby like protein(ENOG410XQFT) |
Kegg | Link to kegg annotations (AT2G18280) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019423785.1) |
Pfam | F-box domain (PF00646.32) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |