| Id Trinity | TRINITY_DN49671_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_416389 |
| Sequence | TAAGATTTTAATATAACTTTAAACAAAGCCACTCTTAAAAATGCTTCCCTGGATCCGGTGCATCCCACCTACACTCTTCTCTCTCCGATAACCTCTCCTT TTTTAACGGTGTTACTGACGGCGGAGCCTCCTTCTCTCCTCGCCGGAGCATGCGACGGATCTGCCATCTCTTAACTTCATGAAAATCTCAGAACATGCTC ATCTCTTCTGGATCTAGACTCTGTTTCTACGTTTTAGTGGTTCCCGTTGTTTATGGATCCGGGTTCTAGAAGCTTCCATTTTCATCATTTTTATTATTTA TTGAGATTTTGCTGCTTAGGGTGTAAAATTTTCAGCTGATTTGGTTCGATTGATCTGTTCCTTCTTCGCTTCAATTTTGTAGGTGTTGTTTCTTTTCTTT TTCTAGTTTTTAATAGAAAGAAAAGAAATTTATGTTTCATTGTTCTGCATTTGAGTTCTTCTTAGATCACCCATGCTATGATACCAGCAAATAGCTTTAA CTCATAATTCTCAACATATAAAGTTTTCAGCTTTTACATAGCTTATTGTTCTGCAGCTTCTGCTGTTATGTTCTTGATGTGTGGCAAAATGTGATTGCTT TTTGTCATGACTGTGATTTTGAGCATGTGTAAGAGATTGGAAAGGAAACTTTGCAAAATTGTCAAGGATTTAGGGGAAGTTTTGATCTAAAAGAAATAGT TATTTTTTTTAATATTAACTGATTATGAATGAGACCCAATAGTTTATGATGGGATTGTAATATTTTGTAGAATCAGGGGTGTGGTATTGGTATATACCTG TTGGGGGTACTCCACTTAATGCGAATTGATTTTAAGATGCATTGAATCTAGAGTTACATCTGCATACTATTGAGTTGCATAGGAAGGACTCACATTCTTA TAAGCATATTTTGTCATCCGTAGTAGAGAATCACCTCAATTTTGTTTTAATGGTTGCAGTTTTTGTGGTGAAAGGAAGATTGGTATGCTGTACAAAAATG TCATTGAAAAGCATACTACAAGAACTGAAGGAGATAAGGGGTGGTATTGGTAGCATATCAAAGCGAGGTGCACAAAGCAAGCCTTGGCCCAGTCGTACGA AGTCATACATAGTTCCTGATGTCACAGTAGCTCCACTTGAACCTATTCCGCAAGGACCATGGGCAAACCTACCTCCTGAGTTGCTTCTGGACATAATCCG GAGGGTTGAAGAAAGTGAGACGTCCTGGCCTTCACGCACTGTCATTGTTTCTTGTGCTTCAGTGTGTAAATCTTGGAGGGTCGTTACAAAAGAGACTGTC AAGACTCCTGAGCAATGTGGAAGGCTCACATTTCCCATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCAATCCAGTGCTTTATCAGGAGGAACAGGG AAACTTCTACATTTCTATTGTACTTCGGTCTGGTGCCATCGGAGAATGAAACTGATAAATTGTTATTAGCTGCGAAAAAGATAAGAAAGGCAACAGGCAC AGACTTTGTCATATCTTTGGTTTCAGATGAGTTTTCTCCATCCAGCAGCGCATATGTTGGAAAACTGAGGTCTAATTTTTTGGGGACCAAGTTCACTATA TATGACAGCCAACCTCCATGTGAAGCTGGAATTCAATCAAATAGCCGTTCAAATAGGAGATTTCACTCTAAACAGGTGTCTCCAAGATTTCCAGCATGTA ACCATGTTGTTAGCACCATAGCTTATGAACTCAATGTTCTCCGTACAAGAGGGCCAAGAAGAATGCACTGCACCATGAACTCCATATCTATCTCAGCTAT TCAGGAAGGGGGCAGTGCCCCAACTCCCACTTCTTTACCTCAAAGTATTGATAGACATTTTTCTCCCTCACCAGCATTGAAAGGAAAACGTCCGGTTACA GATTTAAATTCTGAAAGCCTCTCAGAGCTACCGATGCAAAACCAAGGCTCGGTTGAGCCTCTTGTACTTAAAAACAAGGTTCCCAGATGGCATGAGCAGC TGCAATGCTGGTGCCTAAACTTCAAGGGTCGCGTTACAGTGGCTTCTGTTAAAAACTTTCAACTCGTGGCTGCTGTAGATCCATCGCACAACGTTTCTGC TTCAGAACAAGAGAAGGTTATCTTGCAGTTTGGAAAGATCGGAAAAGACATATTTACCATGGATTACCTTTATCCACTCTCGGCCTTCCAAGCTTTTGCA ATATGCTTAAGCAGCTTCGATACAAAACCCGCATGTGAATGAGACCGATGTATCTGGATCATCATCTTCTGCCGGTTTGTTTCATATATATAATGTGTAA TATGCTAGGAACAGTTCATCAGGCATGGTTACATGCAAACGACAATCTTAGCTCTTCAGTCATTAGTATCATCTCCCTTATGTTAGTTGATATTGGTATT TAACATGTATGTTGTTTCATAACCCTGCAACTAAAATTAAATTAAAGTTAGCGAAATTTCAATTTCATATAATATATAGTTGCAGGGTATTCCTGATCTA TGAATCTCTTGGTTATTTTCAAGTAGATATCATTTTCTGATGATTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_171234; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_416389
| Blastp | Tubby-like F-box protein 2 from Arabidopsis with 64.11% of identity |
|---|---|
| Blastx | Tubby-like F-box protein 5 from Oryza sativa with 63.64% of identity |
| Eggnog | tubby like protein(ENOG410XQFT) |
| Kegg | Link to kegg annotations (AT2G18280) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423785.1) |
| Pfam | F-box domain (PF00646.32) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |