Id Trinity | TRINITY_DN49675_c0_g1_i7 |
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Name Transcript | Ll_transcript_415502 |
Sequence | CAAACTCTTAACCACACGATCAAAATCTAGTTTTTAATCTTGACCGTGCATAACTCAGAAGAGTGTTAGATTCAACGGTCAAGATCAGATCTTCCATTCA ATCATCAAAAAGTGACACCTAATTATCTTTCTCTCTCTTCTCTGAGTCCTTGTTTCTGTGAATGAAACCCAACCCAAATTCAATTCACGAAAATTGAGTC CAAAGTTTGCATCTTTCACCAACTGGGTTGGTTCCAACACCTTCAATTTTTGGGTACAACGAGGTTTGGGTTGGCTTTGCATAATTTGTGGAGATACTGA AGCTATGGAAGCTTATAAGAGATGGGTGAGGCAGAAAAAAAAGACTATGTACACTCTTTGGAGTCTTTGGCTAATGGGTTGACATGGCTTTTTCCAGAGC GGTTTTTGGAATCAGATATTGGACCAGAAGCAGGTTTTGTGAAATTTTGATAACCTTCGGCTACTTCTTTTCAGTTTTAATTATGTTAGACTTTCTCTCA CTTCAAGAATAAAATGGTAAGCACAATAATGTGACTGTACTAGCAAAAATTAGGACCTTCTGGTTCTATTCCAATGATTTCTTTTGGTACATTCGAAAGA AAAAAACAAACTAAGCTAACAACGAAATATCTAACTGCAACAACGGTTGGCAATCTGTTGGGATTGAGCCCCAAATCTTCATCACATCTAGTGAGTGAGA ACCTAATTTTGCCACGAAATCTGCTGCCATATTAGCCTCTCTATTGACAAAGCAAACCTTGACGACCCAAGAAAGAGCCAACCAAGATCTGATCTTGTTG ATCAAAGATAGAATGCTAGCAATTCGAATAGGAATCTCCTCAGAAATAATATGCACAGCTTCCAAGCAGTCGCTTTCCAAGACCACATTCCTGAAACCTA GACGCCAAGCCAGCGACAACCCATTTTCGATAGCCAAAAGTTCTGCTAGAATAGAGGTCCCCTCACCATAGTTAGCAAAGAAACCCGATATCCATTGACC TTTAGAATCCCAAAGAACGCCGCCCCCTCCCATTATGCAAGAGCTTCTGATGCAACTACCATCTACACTCAATTTGACCTGGCCCAACTCCGGGTAGCTC CAATGAGTCATGGGGTACCTTTCCTCTAAAGACCGAGAACCGCCATAGTTGTGCCACTCCCAAAAATCCTGGTGAGTAAAGCGAACCACCAAATTGATAT CCCACTGAGTATCCCCCATAATAGTGTTATTCCTCCATCTCCAAGTCCACCAAATACCTGTCAAGAAGAGAAGACCATTTTTGCCATTATAATTCCCCCA CAACCAGCCCTTAAAAGACTGGGGTATCCAGAATCTAGGCGACGTGAAACCCAAGCGAACCCACAAAGATGATGAATCCTGACAATCCTTAAAGATGTGC AAGAGATCCTCGACACCCACCTGACACCTAACACAATTTGGGCTTGTAGCCAAGTGCCTTCTAAAGCGAAGAGCATTTGACGGAAGAGTGTCATGAAGAC CAAGCCAACACATAAGTTTAACCTTCTCAAGAATCCTCAGCCTCCAAACCATTTTCCAGATGTCATCCATAGATGCCACATTTCCTTCCACATCCATAAG CCAGTCATAGGCCGACCTAGCAGTGTAAGAACCTGTAACATGCCCATCCCAAATCCACCCATTAGATTCAGTAAGAGAACCAGGCGAGTAATTTCCACAA ATAAACTCCTTCACTTGCAACGGAAACATAGTATACAGTCTAGAAAAGTCCCAATTATCTGCTACCCATAGGTCCTTCACCTGAAGGTGAGTATCAGATA TATGGACAAAATCCACATAAGAACAAAGCATCCCCAAACCTGACCAATTTTCATACCATAAGGATTGATCCTCACTTCCCAAATGCAAGTTATAACCCAG TTTGAGCTTATCAAATGCTCTCACAATGCTTCTCCAGATATAAGACGTTGAAGCTTTTGGGGAGCAACAAATAAAGGATTGTACACCAGAGCTTATTGTT GCTACTGATCAAACTCCAACATAATTTTCCAAGAAGGGAAATGTTCGAAATTCTGGCATCCCTTATGCCCAATCCATTATCACGTCTACGCCTTGTGAGA ACCTCCCAACTGACAAGATGGAGGCCCCGACTATTAACATCACCACTCCAAATAAAATTTCTCGTCATCCTATTTATGTTATTGCATACAGTGTTAGGAA ACCACAAGACCTGCATATAATAAACCGGAATAGAGGAGATGACAGACTTCGCAAGGCATAAACGACTCGCTCTATTCAAGAGATTTGCTTTCCAAGAAGC CAAACGACACTGAATCTTCTCCAGAATAGGGTTAAAAATTGCCCTACCAACTCTTCCCTGAAGTAATGGTCCCCAAATAATTTCCAAGATTACCAACCAC CCTCATGGAACAAAGCCTCATAAACCGGTTCTTCCCCCTGTTGGTCACAGATCTGGAGCAGATAAATTTTGATTTGTCTACACTCACTTTCAAACCCGAT GCTTTACAGAAATCATTAAGAGTAGAGGAAACAACCCTAACCTGGGAGTTAGTTGCCTTGCAAAACAGTAAGACATCATCAGCAAAAAGGAGGTGAGAGA TACTAGGGCCACCCCGAGAGAGTTTAATAGGATGCCATATGCCACTATCCACCTTCTGAGAGATAAGAAGAGTGAGCTTCTCCATGCACAAGACAAATAG ATAAGGTGACATAGGATCCCCTTGGTGAAGATCCCTACTAGGAGTAAATGCCTCCAGCCTAGAACCATTCCAAAGAAGAGACACCTTTCCAATGGTTTGT TCATGTTGATCTTGAAAATGTTAGCTAGAAAATAGAAATAAGTTTACTTGGCAGAGCCTTGTGCCTTCTTAGATTCAATATGTTGCAAATTTCTAAAGTC ACACACATTACATTCTTCTATTTACCTACATCTCCTATAAAGTATTGCAAATTCTTATTGTCTTTTCTTTTTATCAACTTTCCTCCTATCATGCCTATGA TATTGAAATTTCTAGCTTACTTGTCAGATCAACAACTTTGTGCAGTGACTACAATTTTGGGAATTATCATAGCTGTCAATGAACATATAATTGATACAGC TCCTACCCAAAATAATACAGGCTCTACTGAGAAATATTTGTTTCCTTATCCATTATGCTTATCTGCATTGAAGGATTTGGAAATGTTAGTTGAAGTTGTG TCACAACATTACTATGGCGATGATAAGAAATGGAATTTCCTTGCTATTACTGAAGGAACCAAGGTTCTGGTTCGACTATCATTGTTTTGGAAGAGTGGAT ATAAGATGCTGCTTCATGGAGGGGAGACATATAATGATGAGACACATTCAGATAGTTTCGCTTCACAACACCAAACAATCTTAAAGCCTGATGGACACCG TGGTTCTGATTATATGAGAAACAATCATGGTCCAAACCCATGGAATCTGGAAGGAAGAGCACTATCTGCTTTAAGTAGTTTCGGAGAAAAAGCCAGAACG GGGTCAGATCCAATGTGGTTACGTAGGGTTCATCATCAACAAGCAACTCTGGAGCATACTGGTAATCGGTTTTGAAGATTTTTTAGCTGTAGACAGTAAA CTAATTGATTATAATGCTTGTGGAAGTCAACTAGTTCTTGTTGCCCGCTGCATTTTTGCAGTCTCAAGGGTAGAGAGACCAACACTTTCTAGCATATTGT CCAAAAGAGGTCTTCACGGGGTTCTGTTTCTGATTGGCGAAGTTCTATTTATTAGTAGACCACTTATTAATGTTCTATTTATTCGAAAATATGGTGTCCG GACATGGACCCCTTGGTCCCTTTCACTGGCTATTGACTGCATATCAAACAGTATTCTTTCACTTGTTATGACATCTGTAGATGGTGGGGATGAGCAGAAG TTTCATCTTTCTGCTCCAGAAAAGGATGAGGTTTGAGTTTCTTTAGACTTAGAGCCATACCATATGAACATAAATGGACCCTTCTACACTGAACTTTTGC TATTAAAACTGCATTTTGTGCTATCTTATTTGCTAGTAACATTCAACCCATTAAAGAGCAGCTTCTGAAATAGTTTTGCTTCAGGTTAAACGATGGAAGC TGTTATTTTTGTACTTTACCTAATGAGAGATCCATTTCTCAGCAAGTATACTAGGCAAAGACTCGAAAGCACGGAGACAATTTTGGAACCTTTACCTATC ATAGGATTTCTTGCAGCAAAAATCGTTGAGCTTATAATTGGAGCGCAAACTCGATACACTTACATGTCGGGATCATGATATAAAATCTAGAAGAAACACT TCACTGCCTTCCCAGATTGTGGGAAAGCATCTTACTGTGCTCTCACATTATCTCCTGTTCCAAAATTTTCAAATGATGAGGGGATATGAAGTATGCTACT ACTTTGATTGAAAAGTAAGAAAAATGGCAAGCTTGAACATTTGTTTTGCACAATGATGGAAGGTTATGGCTGTCTGCGAATTCAACACCGAACGTGAAAC TTTTATTTCATTCGGTTCCTTTACGGACTTAATTCAGAGATGTTGGACAAGTTGATTGCAAGGATGGCTCTACTATCAACATTTGTTTTGAAATTTTTTG CTTTAATTTTAATAATAAAAAAGAGAAATAACAAAAGATACTGATTTGTCAAAAATATTATTAGATGCCAGTGCAAAGATATTATCACACTTGCATACCA ATTAAACATTTCATTGTTTTATTCTACTCCCAAACAAAGAGGGTTGGTGAGTCTACCTCAAACACTTGTAGTTATGAGCGTCAGTCAATTGGAAAGTTTA TCATGTGATTCTTCAGCTCAGCAAGCTGTATTCTGATCGGAGTTTCAAGACAAACCGGTTTTTGCCTTGGCCGGCTGGTTATCCGGTGTGGCATGCCTTT TAATAGTCTAATCCGGTTCAACCTTGAATTGGACAAAGACACCTGGTTAGGACAGGCACAATTTTCACTTCAAGGTTGGACCGGACGAGTCGGACTGCTG GTACGGTTGTACAACAAAGCAAACCATTATTCTACACCTTTGTAGGTATTACAGTTGTTCTGTAGTGATGTAGCCATTTATTATTTTCGCGTGTCATTGT CCTTTTGATGGTTGAACTAAATGTCTCTGTTTGTTAAGGTACTATGAAATTATT BLAST |
Tissue | pods |
Gene name | LI_gene_171264; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415502
Blastp | Putative ribonuclease H protein At1g65750 from Arabidopsis with 28.81% of identity |
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Blastx | Peroxisome biogenesis protein 16 from Arabidopsis with 50.28% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019431061.1) |
Pfam | zinc-binding in reverse transcriptase (PF13966.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |