Ll_transcript_415292

• Id Trinity: TRINITY_DN49682_c4_g1_i11
• Name Transcript: Ll_transcript_415292
• Sequence: CATAAATTAGAATCATATTTGGGTTTCATTTTTATATTGGCTTAATTTAATTATCGAAAAATTCTAAGGTCAATAATCTATGGATATCGATAAAATTTTG GGTACTACCAAACCTGCAAGTTTTCCAAGGAAGAGTGCTATTTATGTGTGGGGATACAATCAATCTGGTCAGACAGGGAGAAAGGGGAAACAGGATCAGC TGAGGATTCCGAAGCAGCTGCCTCCTGAGCTGTTTGGATGTCCAGCTGGTTTTAATGCACGGTGGTTGGATGTTGCTTGTGGTCGTGAGCATACCGCAGC AATTGCTTCCGATGGCTCACTTTTTACATGGGGGGCTAATGACTATGGTCAATTGGGTGATGGAACTGAGGAGCGAAGGAAACATCCGAAGAAAGTAAAA CAACTAGGGTCGGAGTTTGTAAAATCTGTGTCCTGTGGAGCACATTGTTCTGCTTGCATTGCAGAACCTCGTGACAATGATGGTACTGTATCTACTGGGA GGCTCTGGGTTTGGGGACAAAATCAGGGATCAAATTTTCCTAGATTGTTCTGGGGGGCCTTCGAACCTAACACGGTTATTCATCAAGTGTCATGTGGAGC TGCCCATGTGGTTGCTTTGTCTGAGGCGGGCCTTCTACAAGCTTGGGGATACAATGAGTGTGGCCAACTTGGCCGAGGTGTTACTTGTGAAGGACTTCAG GGGGCTCGTATTTTAAGTTCTTATGCTAAGTTCCTTGATGAAGCCCCCGAGCTTGTGAAGATTACCAAAGTGTCATGTGGGGAATACCACACAGCAGCCA TTTCTGATAAGGGCGAGGTTTACACATGGGGGCTAGGAAATATGGGCCAACTTGGGCATTCTTCACTCCAGTATGGGGATAAGGAGCTTCTCCCGAGGAG GGTGGTTTCCCTTGATGGTATTGTCATAAAAGATGTGGCATGTGGTGGTGTACATACTTGTGCTCTGAGTAAAGAAGGAGCACTTTATGCTTGTGGCGGT GGTCAATCTGGTCAGTTAGGCCTTGGCCCCCAAACTGGATTGTTCTCTTGTGTAGCTAATGATTCTCAGACATTTTTCCGAAACATTCCCATTTTAATTG TTCCAAAAGATGTGCAATTTGTTGCATGTGGACATTCCCATACTCTTATTTCTACGAAGGAAGGTCGAATTCATGGGTGGGGTTATAATAATTACGGCCA AGCAGCCAATGAGAAATGTACATATGCCTGGTATCCATCACCTGTTGACTGGTGCGTTGGGGAGATCCGAAAACTAGCTGCTGGTGGGGGCCATTCGGCT GTGTTGACCGATGCTTGTTCATTAAAGGAGCTGTGTGAGTTTGTTCTCGCAGATTGTATGACCTTATCAAATGCTGCTAAGGTCGAGGATATTGCTTCTA GAACTGGATCGGATGCTTTAGCACGCCTTTGCGGAAGACTCAGGTATTTTGTAGAATTAATAAGGCTCTGCATGAATTAATGAATATGAACAAAGATAAG GTTCTGCATATTTCAATCATTTTCGTAGTGATTACCTAAGATTGATTAATATGCTTACCCTTTTTCTTACTTTGCTGTCCTTGTTTATGAAACTTGACTT CAAACTCTATTAATGATTTGTGAGAAACAAAAGCACCACATAAAATGACCCTTTTCATTGATTTGCCTCCTGCAGTATTATGATATAACTGTCTCCCCTT TAGTTTATGTTTCTTTCATAATTTTTGCTTTGATGTTTTCGCAACGAATCGAATGACGACGATCTTATGACAATTTCGGCGTCGCAGAGAGTATTTGCTT ATTAATGGTGGTGATGATGAAGAGAACGTGGTCAGTAAAATCTGACAATATATGAAGTTAGTATTAATCACAATTTATTGTTGTAATGTAAATCTGTGTA TTCAGAAGTTGTAACTATGTTATTATTCTGTAACTAGTATCAATTGAATAAGGATTTGTACTTGACTATGTATAGACCATGAATATGCCAATATTGAATT TCAAACTTCTTTCTTTCTCTTTTTATTTCGGGAATAAAGTATCTATCGGTATAAGGAGATATGTTATCTTCTCCTACTAGTGAAAT
• Tissue: pods
• Gene name: LI_gene_171350;
• Additional information: details;

Expression of Ll_transcript_415292

FPKM

• PAB: 0.1
• PNAB: 0.2
• PS1: 1.4
• PS2: 0.2
• PS3: 1.1
• PW1: 0
• PW2: 0.2
• PW3: 1.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_415292

• Blastp: Ultraviolet-B receptor UVR8 from Arabidopsis with 32.32% of identity
• Blastx: Probable E3 ubiquitin-protein ligase HERC3 from Homo with 33.67% of identity
• Eggnog: regulator of chromosome condensation(COG5184)
• Kegg: Link to kegg annotations (AT5G63860)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456541.1)
• Pfam: Regulator of chromosome condensation (RCC1) repeat (PF00415.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;