Id Trinity | TRINITY_DN49682_c4_g1_i14 |
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Name Transcript | Ll_transcript_415295 |
Sequence | ATTCTTTCTCTCTTCTCTTTCGGTATGCAACGTTTCTCTCAAAACGACTTCGTTTCATTCCATCATTCTCACATTACAATCCAAACCCTAGCTCTATATT CCATTCCATTGCTTCATTATAACTAAATTAAAGCAATTTTTCCTTCAATTGAAAGCAGAATCATAATTGGGTTTCATTTTTTTGTATTGGTTTAATTTGA GTATCTAAAAGTATGTTTTTTTGGGTTTCATAATTTTGGGATTTTTTTTCCCATCTTATAATCCATATAATGTGTTATAGATCCTTTGTTTCTGAATAGT ATAACTGTTTTTATTCTCATCTGTTTGATATTACTATATTTGAAGAATGGAATGTTTTTTTATGAGTGTGATTATTTTGGGGATTTATTTTGCTATCTTA TCATTCACACCACAAATCAGACTATGTGTGCTTGATGCTATACATAACTCGGATAAAGTGTGAAGGTTGTGTTAGACAATCAACATCGACATAAAATTTG CCGAATCTATATGATATGGATCACTCATACCATGTGTTATATATGTTTTGTTTCTGTATAATATAATTGCTATTGTTCTCATTGGTTGTGAATTACAAAT TTTAGTTGTTGTATATTGAATTGGTTTATTTGCTTCCTTATTTAGATTCTAAGGTCAATAATCTATGGATATCGATAAAATTTTGGGTACTACCAAACCT GCAAGTTTTCCAAGGAAGAGTGCTATTTATGTGTGGGGATACAATCAATCTGGTCAGACAGGGAGAAAGGGGAAACAGGATCAGCTGAGGATTCCGAAGC AGCTGCCTCCTGAGCTGTTTGGATGTCCAGCTGGTTTTAATGCACGGTGGTTGGATGTTGCTTGTGGTCGTGAGCATACCGCAGCAATTGCTTCCGATGG CTCACTTTTTACATGGGGGGCTAATGACTATGGTCAATTGGGTGATGGAACTGAGGAGCGAAGGAAACATCCGAAGAAAGTAAAACAACTAGGGTCGGAG TTTGTAAAATCTGTGTCCTGTGGAGCACATTGTTCTGCTTGCATTGCAGAACCTCGTGACAATGATGGTACTGTATCTACTGGGAGGCTCTGGGTTTGGG GACAAAATCAGGGATCAAATTTTCCTAGATTGTTCTGGGGGGCCTTCGAACCTAACACGGTTATTCATCAAGTGTCATGTGGAGCTGCCCATGTGGTTGC TTTGTCTGAGGCGGGCCTTCTACAAGCTTGGGGCGAGTCACTAATTGCTTCTCTTTATTTTCTTTCCAATGTTTTGTAACATCAATGATTCATGATTGCC TTTTACGGAGTTGACATGGTTAAAGACCTTTAAATTTACAGAGCATTGAATGCAGTGAAGTAAACTTGAGCATTCACAAAGTAGGTTTCTTGCCACCTAC TAATCGGACTTTTCTCACTGTTTCCATAAACCAGGATACAATGAGTGTGGCCAACTTGGCCGAGGTGTTACTTGTGAAGGACTTCAGGGGGCTCGTATTT TAAGTTCTTATGCTAAGTTCCTTGATGAAGCCCCCGAGCTTGTGAAGATTACCAAAGTGTCATGTGGGGAATACCACACAGCAGCCATTTCTGATAAGGG CGAGGTGTAAGTAATTTGAAGGACATTCTAGTTGGAGATAATCAGATAATTATAATTTTAAGCTTGAGAATTGTGGTTTTCCGCATGACATTAGGGAATC TGACACCAGGAGACAATATGCAATGGAAATCCTGCATCTATTATGCAAGTTTCTATTCCCTTGGCTTGGTTATACAATAAAAAAACTATAGTTGACTGTA GTTATATATTCCTAGAGCCAACAGGGTTATCTTCTAAGTTAAGTAACCGTAATATTATCTAGATTTTGTTTGAAAAAGTTTGCAACAAGATTTTTTATTC TGTTGATAATTTGACATCCACATATGATTTATTGGTAAGTATTTATTTATTATTTTTCATTATAGAATGTTTGTTATGGTGTAAGATAGTAGTTGCTGAA AACTGGGAGCTTAAAATATGTATGGTAACATTGCATCAGAAATAGGCATATGTTGTTTACGGTGGTTTCCACTCACCAAATTTGCTATTTTGTGTTTGTG ATTTTTAATGAAAAAAGAATATGCACATATTATAGAGTGGATGACATCTTTTATTCTTATTGTTGAGACATGTAGACCTCAAGTTACTTCTTTTCGTTTA CCGAGGAATTATTTATTCCAGTTATATGTTAGGGATCCATAAGAATTAATAAATCATGACTACTTATGGTATTTAGCTTGTTGTGATAATATTTCCTCAC TTATTATATTTTCCGTTGGACCAGTTACACATGGGGGCTCGGAAATATGGGTCAACTTGGCCATTCTTCACTCCAGTATGGGGATAAGGAGCTTCTCCCG AGGAGGGTGGTTTCCCTTGATGGTATTGTCATAAAAGATGTGGCATGTGGTGGTGTACATACTTGTGCTCTGAGTAAAGAAGGAGCACTTTATGCTTGTG GCGGTGGTCAATCTGGTCAGTTAGGCCTTGGCCCCCAAACTGGATTGTTCTCTTGTGTAGCTAATGATTCTCAGACATTTTTCCGAAACATTCCCATTTT AATTGTTCCAAAAGATGTGCAATTTGTTGCATGTGGACATTCCCATACTCTTATTTCTACGAAGGAAGGTCGAATTCATGGGTGGGGTTATAATAATTAC GGCCAAGCAGCCAATGAGAAATGTACATATGCCTGGTATCCATCACCTGTTGACTGGTGCGTTGGGGAGATCCGAAAACTAGCTGCTGGTGGGGGCCATT CGGCTGTGTTGACCGATGCTTGTTCATTAAAGGAGCTGTGTGAGTTTGTTCTCGCAGATTGTATGACCTTATCAAATGCTGCTAAGGTCGAGGATATTGC TTCTAGAACTGGATCGGATGCTTTAGCACGCCTTTGCGGAAGACTCAGAGAGTATTTGCTTATTAATGGTGGTGATGATGAAGAGAACGTGGTCAGTAAA ATCTGACAATATATGAAGTTAGTATTAATCACAATTTATTGTTGTAATGTAAATCTGTGTATTCAGAAGTTGTAACTATGTTATTATTCTGTAACTAGTA TCAATTGAATAAGGATTTGTACTTGACTATGTATAGACCATGAATATGCCAATATTGAATTTCAAACTTCTTTCTTTCTCTTTTTATTTCGGGAATAAAG TATCTATCGGTATAAGGAGATATGTTATCTTCTCCTACTAGTGAAAT BLAST |
Tissue | pods |
Gene name | LI_gene_171350; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415295
Blastp | Probable E3 ubiquitin-protein ligase HERC4 from Mus with 38.61% of identity |
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Blastx | RCC1 and BTB domain-containing protein 2 from Rattus with 30.17% of identity |
Eggnog | ubiquitin protein ligase(COG5021) |
Kegg | Link to kegg annotations (67345) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019456541.1) |
Pfam | Regulator of chromosome condensation (RCC1) repeat (PF00415.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |