Id Trinity | TRINITY_DN49682_c4_g1_i17 |
---|---|
Name Transcript | Ll_transcript_415298 |
Sequence | CATAAATTAGAATCATATTTGGGTTTCATTTTTATATTGGCTTAATTTAATTATCGAAAAATTCTAAGGTCAATAATCTATGGATATCGATAAAATTTTG GGTACTACCAAACCTGCAAGTTTTCCAAGGAAGAGTGCTATTTATGTGTGGGGATACAATCAATCTGGTCAGACAGGGAGAAAGGGGAAACAGGATCAGC TGAGGATTCCGAAGCAGCTGCCTCCTGAGCTGTTTGGATGTCCAGCTGGTTTTAATGCACGGTGGTTGGATGTTGCTTGTGGTCGTGAGCATACCGCAGC AATTGCTTCCGATGGCTCACTTTTTACATGGGGGGCTAATGACTATGGTCAATTGGGTGATGGAACTGAGGAGCGAAGGAAACATCCGAAGAAAGTAAAA CAACTAGGGTCGGAGTTTGTAAAATCTGTGTCCTGTGGAGCACATTGTTCTGCTTGCATTGCAGAACCTCGTGACAATGATGGTACTGTATCTACTGGGA GGCTCTGGGTTTGGGGACAAAATCAGGGATCAAATTTTCCTAGATTGTTCTGGGGGGCCTTCGAACCTAACACGGTTATTCATCAAGTGTCATGTGGAGC TGCCCATGTGGTTGCTTTGTCTGAGGCGGGCCTTCTACAAGCTTGGGGCGAGTCACTAATTGCTTCTCTTTATTTTCTTTCCAATGTTTTGTAACATCAA TGATTCATGATTGCCTTTTACGGAGTTGACATGGTTAAAGACCTTTAAATTTACAGAGCATTGAATGCAGTGAAGTAAACTTGAGCATTCACAAAGTAGG TTTCTTGCCACCTACTAATCGGACTTTTCTCACTGTTTCCATAAACCAGGATACAATGAGTGTGGCCAACTTGGCCGAGGTGTTACTTGTGAAGGACTTC AGGGGGCTCGTATTTTAAGTTCTTATGCTAAGTTCCTTGATGAAGCCCCCGAGCTTGTGAAGATTACCAAAGTGTCATGTGGGGAATACCACACAGCAGC CATTTCTGATAAGGGCGAGGTGTAAGTAATTTGAAGGACATTCTAGTTGGAGATAATCAGATAATTATAATTTTAAGCTTGAGAATTGTGGTTTTCCGCA TGACATTAGGGAATCTGACACCAGGAGACAATATGCAATGGAAATCCTGCATCTATTATGCAAGTTTCTATTCCCTTGGCTTGGTTATACAATAAAAAAA CTATAGTTGACTGTAGTTATATATTCCTAGAGCCAACAGGGTTATCTTCTAAGTTAAGTAACCGTAATATTATCTAGATTTTGTTTGAAAAAGTTTGCAA CAAGATTTTTTATTCTGTTGATAATTTGACATCCACATATGATTTATTGGTAAGTATTTATTTATTATTTTTCATTATAGAATGTTTGTTATGGTGTAAG ATAGTAGTTGCTGAAAACTGGGAGCTTAAAATATGTATGGTAACATTGCATCAGAAATAGGCATATGTTGTTTACGGTGGTTTCCACTCACCAAATTTGC TATTTTGTGTTTGTGATTTTTAATGAAAAAAGAATATGCACATATTATAGAGTGGATGACATCTTTTATTCTTATTGTTGAGACATGTAGACCTCAAGTT ACTTCTTTTCGTTTACCGAGGAATTATTTATTCCAGTTATATGTTAGGGATCCATAAGAATTAATAAATCATGACTACTTATGGTATTTAGCTTGTTGTG ATAATATTTCCTCACTTATTATATTTTCCGTTGGACCAGTTACACATGGGGGCTCGGAAATATGGGTCAACTTGGCCATTCTTCACTCCAGTATGGGGAT AAGGAGCTTCTCCCGAGGAGGGTGGTTTCCCTTGATGGTATTGTCATAAAAGATGTGGCATGTGGTGGTGTACATACTTGTGCTCTGAGTAAAGAAGGAG CACTTTATGCTTGTGGCGGTGGTCAATCTGGTCAGTTAGGCCTTGGCCCCCAAACTGGATTGTTCTCTTGTGTAGCTAATGATTCTCAGACATTTTTCCG AAACATTCCCATTTTAATTGTTCCAAAAGATGTGCAATTTGTTGCATGTGGACATTCCCATACTCTTATTTCTACGAAGGAAGGTCGAATTCATGGGTGG GGTTATAATAATTACGGCCAAGCAGCCAATGAGAAATGTACATATGCCTGGTATCCATCACCTGTTGACTGGTGCGTTGGGGAGATCCGAAAACTAGCTG CTGGTGGGGGCCATTCGGCTGTGTTGACCGATGCTTGTTCATTAAAGGAGCTGTGTGAGTTTGTTCTCGCAGATTGTATGACCTTATCAAATGCTGCTAA GGTCGAGGATATTGCTTCTAGAACTGGATCGGATGCTTTAGCACGCCTTTGCGGAAGACTCAGGTATTTTGTAGAATTAATAAGGCTCTGCATGAATTAA TGAATATGAACAAAGATAAGGTTCTGCATATTTCAATCATTTTCGTAGTGATTACCTAAGATTGATTAATATGCTTACCCTTTTTCTTACTTTGCTGTCC TTGTTTATGAAACTTGACTTCAAACTCTATTAATGATTTGTGAGAAACAAAAGCACCACATAAAATGACCCTTTTCATTGATTTGCCTCCTGCAGTATTA TGATATAACTGTCTCCCCTTTAGTTTATGTTTCTTTCATAATTTTTGCTTTGATGTTTTCGCAACGAATCGAATGACGACGATCTTATGACAATTTCGGC GTCGCAGAGAGTATTTGCTTATTAATGGTGGTGATGATGAAGAGAACGTGGTCAGTAAAATCTGACAATATATGAAGTTAGTATTAATCACAATTTATTG TTGTAATGTAAATCTGTGTATTCAGAAGTTGTAACTATGTTATTATTCTGTAACTAGTATCAATTGAATAAGGATTTGTACTTGACTATGTATAGACCAT GAATATGCCAATATTGAATTTCAAACTTCTTTCTTTCTCTTTTTATTTCGGGAATAAAGTATCTATCGGTATAAGGAGATATGTTATCTTCTCCTACTAG TGAAAT BLAST |
Tissue | pods |
Gene name | LI_gene_171350; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415298
Blastp | RCC1 and BTB domain-containing protein 2 from Rattus with 30.17% of identity |
---|---|
Blastx | RCC1 and BTB domain-containing protein 2 from Rattus with 30.17% of identity |
Eggnog | regulator of chromosome condensation(COG5184) |
Kegg | Link to kegg annotations (290363) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019456545.1) |
Pfam | Regulator of chromosome condensation (RCC1) repeat (PF00415.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |