Id Trinity | TRINITY_DN49682_c4_g1_i18 |
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Name Transcript | Ll_transcript_415299 |
Sequence | ATTCTTTCTCTCTTCTCTTTCGGTATGCAACGTTTCTCTCAAAACGACTTCGTTTCATTCCATCATTCTCACATTACAATCCAAACCCTAGCTCTATATT CCATTCCATTGCTTCATTATAACTAAATTAAAGCAATTTTTCCTTCAATTGAAAGCAGAATCATAATTGGGTTTCATTTTTTTGTATTGGTTTAATTTGA GTATCTAAAAGTATGTTTTTTTGGGTTTCATAATTTTGGGATTTTTTTTCCCATCTTATAATCCATATAATGTGTTATAGATCCTTTGTTTCTGAATAGT ATAACTGTTTTTATTCTCATCTGTTTGATATTACTATATTTGAAGAATGGAATGTTTTTTTATGAGTGTGATTATTTTGGGGATTTATTTTGCTATCTTA TCATTCACACCACAAATCAGACTATGTGTGCTTGATGCTATACATAACTCGGATAAAGTGTGAAGGTTGTGTTAGACAATCAACATCGACATAAAATTTG CCGAATCTATATGATATGGATCACTCATACCATGTGTTATATATGTTTTGTTTCTGTATAATATAATTGCTATTGTTCTCATTGGTTGTGAATTACAAAT TTTAGTTGTTGTATATTGAATTGGTTTATTTGCTTCCTTATTTAGATTCTAAGGTCAATAATCTATGGATATCGATAAAATTTTGGGTACTACCAAACCT GCAAGTTTTCCAAGGAAGAGTGCTATTTATGTGTGGGGATACAATCAATCTGGTCAGACAGGGAGAAAGGGGAAACAGGATCAGCTGAGGATTCCGAAGC AGCTGCCTCCTGAGCTGTTTGGATGTCCAGCTGGTTTTAATGCACGGTGGTTGGATGTTGCTTGTGGTCGTGAGCATACCGCAGCAATTGCTTCCGATGG CTCACTTTTTACATGGGGGGCTAATGACTATGGTCAATTGGGTGATGGAACTGAGGAGCGAAGGAAACATCCGAAGAAAGTAAAACAACTAGGGTCGGAG TTTGTAAAATCTGTGTCCTGTGGAGCACATTGTTCTGCTTGCATTGCAGAACCTCGTGACAATGATGGTACTGTATCTACTGGGAGGCTCTGGGTTTGGG GACAAAATCAGGGATCAAATTTTCCTAGATTGTTCTGGGGGGCCTTCGAACCTAACACGGTTATTCATCAAGTGTCATGTGGAGCTGCCCATGTGGTTGC TTTGTCTGAGGCGGGCCTTCTACAAGCTTGGGGATACAATGAGTGTGGCCAACTTGGCCGAGGTGTTACTTGTGAAGGACTTCAGGGGGCTCGTATTTTA AGTTCTTATGCTAAGTTCCTTGATGAAGCCCCCGAGCTTGTGAAGATTACCAAAGTGTCATGTGGGGAATACCACACAGCAGCCATTTCTGATAAGGGCG AGGTGTAAGTAATTTGAAGGACATTCTAGTTGGAGATAATCAGATAATTATAATTTTAAGCTTGAGAATTGTGGTTTTCCGCATGACATTAGGGAATCTG ACACCAGGAGACAATATGCAATGGAAATCCTGCATCTATTATGCAAGTTTCTATTCCCTTGGCTTGGTTATACAATAAAAAAACTATAGTTGACTGTAGT TATATATTCCTAGAGCCAACAGGGTTATCTTCTAAGTTAAGTAACCGTAATATTATCTAGATTTTGTTTGAAAAAGTTTGCAACAAGATTTTTTATTCTG TTGATAATTTGACATCCACATATGATTTATTGGTAAGTATTTATTTATTATTTTTCATTATAGAATGTTTGTTATGGTGTAAGATAGTAGTTGCTGAAAA CTGGGAGCTTAAAATATGTATGGTAACATTGCATCAGAAATAGGCATATGTTGTTTACGGTGGTTTCCACTCACCAAATTTGCTATTTTGTGTTTGTGAT TTTTAATGAAAAAAGAATATGCACATATTATAGAGTGGATGACATCTTTTATTCTTATTGTTGAGACATGTAGACCTCAAGTTACTTCTTTTCGTTTACC GAGGAATTATTTATTCCAGTTATATGTTAGGGATCCATAAGAATTAATAAATCATGACTACTTATGGTATTTAGCTTGTTGTGATAATATTTCCTCACTT ATTATATTTTCCGTTGGACCAGTTACACATGGGGGCTCGGAAATATGGGTCAACTTGGCCATTCTTCACTCCAGTATGGGGATAAGGAGCTTCTCCCGAG GAGGGTGGTTTCCCTTGATGGTATTGTCATAAAAGATGTGGCATGTGGTGGTGTACATACTTGTGCTCTGAGTAAAGAAGGAGCACTTTATGCTTGTGGC GGTGGTCAATCTGGTCAGTTAGGCCTTGGCCCCCAAACTGGATTGTTCTCTTGTGTAGCTAATGATTCTCAGACATTTTTCCGAAACATTCCCATTTTAA TTGTTCCAAAAGATGTGCAATTTGTTGCATGTGGACATTCCCATACTCTTATTTCTACGAAGGAAGGTCGAATTCATGGGTGGGGTTATAATAATTACGG CCAAGCAGCCAATGAGAAATGTACATATGCCTGGTATCCATCACCTGTTGACTGGTGCGTTGGGGAGATCCGAAAACTAGCTGCTGGTGGGGGCCATTCG GCTGTGTTGACCGATGCTTGTTCATTAAAGGAGCTGTGTGAGTTTGTTCTCGCAGATTGTATGACCTTATCAAATGCTGCTAAGGTCGAGGATATTGCTT CTAGAACTGGATCGGATGCTTTAGCACGCCTTTGCGGAAGACTCAGGTATTTTGTAGAATTAATAAGGCTCTGCATGAATTAATGAATATGAACAAAGAT AAGGTTCTGCATATTTCAATCATTTTCGTAGTGATTACCTAAGATTGATTAATATGCTTACCCTTTTTCTTACTTTGCTGTCCTTGTTTATGAAACTTGA CTTCAAACTCTATTAATGATTTGTGAGAAACAAAAGCACCACATAAAATGACCCTTTTCATTGATTTGCCTCCTGCAGTATTATGATATAACTGTCTCCC CTTTAGTTTATGTTTCTTTCATAATTTTTGCTTTGATGTTTTCGCAACGAATCGAATGACGACGATCTTATGACAATTTCGGCGTCGCAGAGAGTATTTG CTTATTAATGGTGGTGATGATGAAGAGAACGTGGTCAGTAAAATCTGACAATATATGAAGTTAGTATTAATCACAATTTATTGTTGTAATGTAAATCTGT GTATTCAGAAGTTGTAACTATGTTATTATTCTGTAACTAGTATCAATTGAATAAGGATTTGTACTTGACTATGTATAGACCATGAATATGCCAATATTGA ATTTCAAACTTCTTTCTTTCTCTTTTTATTTCGGGAATAAAGTATCTATCGGTATAAGGAGATATGTTATCTTCTCCTACTAGTGAAAT BLAST |
Tissue | pods |
Gene name | LI_gene_171350; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415299
Blastp | RCC1 and BTB domain-containing protein 1 from Mus with 29.66% of identity |
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Blastx | RCC1 and BTB domain-containing protein 1 from Mus with 29.66% of identity |
Eggnog | regulator of chromosome condensation(COG5184) |
Kegg | Link to kegg annotations (71330) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019456545.1) |
Pfam | Regulator of chromosome condensation (RCC1) repeat (PF00415.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |