Ll_transcript_415279

• Id Trinity: TRINITY_DN49682_c4_g1_i3
• Name Transcript: Ll_transcript_415279
• Sequence: CATAAATTAGAATCATATTTGGGTTTCATTTTTATATTGGCTTAATTTAATTATCGAAAAATTCTAAGGTCAATAATCTATGGATATCGATAAAATTTTG GGTACTACCAAACCTGCAAGTTTTCCAAGGAAGAGTGCTATTTATGTGTGGGGATACAATCAATCTGGTCAGACAGGGAGAAAGGGGAAACAGGATCAGC TGAGGATTCCGAAGCAGCTGCCTCCTGAGCTGTTTGGATGTCCAGCTGGTTTTAATGCACGGTGGTTGGATGTTGCTTGTGGTCGTGAGCATACCGCAGC AATTGCTTCCGATGGCTCACTTTTTACATGGGGGGCTAATGACTATGGTCAATTGGGTGATGGAACTGAGGAGCGAAGGAAACATCCGAAGAAAGTAAAA CAACTAGGGTCGGAGTTTGTAAAATCTGTGTCCTGTGGAGCACATTGTTCTGCTTGCATTGCAGAACCTCGTGACAATGATGGTACTGTATCTACTGGGA GGCTCTGGGTTTGGGGACAAAATCAGGGATCAAATTTTCCTAGATTGTTCTGGGGGGCCTTCGAACCTAACACGGTTATTCATCAAGTGTCATGTGGAGC TGCCCATGTGGTTGCTTTGTCTGAGGCGGGCCTTCTACAAGCTTGGGGATACAATGAGTGTGGCCAACTTGGCCGAGGTGTTACTTGTGAAGGACTTCAG GGGGCTCGTATTTTAAGTTCTTATGCTAAGTTCCTTGATGAAGCCCCCGAGCTTGTGAAGATTACCAAAGTGTCATGTGGGGAATACCACACAGCAGCCA TTTCTGATAAGGGCGAGGTTTACACATGGGGGCTAGGAAATATGGGCCAACTTGGGCATTCTTCACTCCAGTATGGGGATAAGGAGCTTCTCCCGAGGAG GGTGGTTTCCCTTGATGGTATTGTCATAAAAGATGTGGCATGTGGTGGTGTACATACTTGTGCTCTGAGTAAAGAAGGAGCACTTTATGCTTGTGGCGGT GGTCAATCTGGTCAGTTAGGCCTTGGCCCCCAAACTGGATTGTTCTCTTGTGTAGCTAATGATTCTCAGACATTTTTCCGAAACATTCCCATTTTAATTG TTCCAAAAGATGTGCAATTTGTTGCATGTGGACATTCCCATACTCTTATTTCTACGAAGGAAGGTCGAATTCATGGGTGGGGTTATAATAATTACGGCCA AGCAGCCAATGAGAAATGTACATATGCCTGGTATCCATCACCTGTTGACTGGTGCGTTGGGGAGATCCGAAAACTAGCTGCTGGTGGGGGCCATTCGGCT GTGTTGACCGATGCTTGTTCATTAAAGGAGCTGTGTGAGTTTGTTCTCGCAGATTGTATGACCTTATCAAATGCTGCTAAGGTCGAGGATATTGCTTCTA GAACTGGATCGGATGCTTTAGCACGCCTTTGCGGAAGACTCAGAGAGTATTTGCTTATTAATGGTGGTGATGATGAAGAGAACGTGGTCAGTAAAATCTG ACAATATATGAAGTTAGTATTAATCACAATTTATTGTTGTAATGTAAATCTGTGTATTCAGAAGTTGTAACTATGTTATTATTCTGTAACTAGTATCAAT TGAATAAGGATTTGTACTTGACTATGTATAGACCATGAATATGCCAATATTGAATTTCAAACTTCTTTCTTTCTCTTTTTATTTCGGGAATAAAGTATCT ATCGGTATAAGGAGATATGTTATCTTCTCCTACTAGTGAAAT
• Tissue: pods
• Gene name: LI_gene_171350;
• Additional information: details;

Expression of Ll_transcript_415279

FPKM

• PAB: 15.9
• PNAB: 4.7
• PS1: 4.2
• PS2: 2.1
• PS3: 3.5
• PW1: 3.5
• PW2: 2.1
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_415279

• Blastp: Ultraviolet-B receptor UVR8 from Arabidopsis with 32.32% of identity
• Blastx: Probable E3 ubiquitin-protein ligase HERC3 from Homo with 33.67% of identity
• Eggnog: regulator of chromosome condensation(COG5184)
• Kegg: Link to kegg annotations (AT5G63860)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456541.1)
• Pfam: Regulator of chromosome condensation (RCC1) repeat (PF00415.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;