| Id Trinity | TRINITY_DN49682_c4_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_415288 |
| Sequence | ATTCTTTCTCTCTTCTCTTTCGGTATGCAACGTTTCTCTCAAAACGACTTCGTTTCATTCCATCATTCTCACATTACAATCCAAACCCTAGCTCTATATT CCATTCCATTGCTTCATTATAACTAAATTAAAGCAATTTTTCCTTCAATTGAAAGCAGAATCATAATTGGGTTTCATTTTTTTGTATTGGTTTAATTTGA GTATCTAAAAGTATGTTTTTTTGGGTTTCATAATTTTGGGATTTTTTTTCCCATCTTATAATCCATATAATGTGTTATAGATCCTTTGTTTCTGAATAGT ATAACTGTTTTTATTCTCATCTGTTTGATATTACTATATTTGAAGAATGGAATGTTTTTTTATGAGTGTGATTATTTTGGGGATTTATTTTGCTATCTTA TCATTCACACCACAAATCAGACTATGTGTGCTTGATGCTATACATAACTCGGATAAAGTGTGAAGGTTGTGTTAGACAATCAACATCGACATAAAATTTG CCGAATCTATATGATATGGATCACTCATACCATGTGTTATATATGTTTTGTTTCTGTATAATATAATTGCTATTGTTCTCATTGGTTGTGAATTACAAAT TTTAGTTGTTGTATATTGAATTGGTTTATTTGCTTCCTTATTTAGATTCTAAGGTCAATAATCTATGGATATCGATAAAATTTTGGGTACTACCAAACCT GCAAGTTTTCCAAGGAAGAGTGCTATTTATGTGTGGGGATACAATCAATCTGGTCAGACAGGGAGAAAGGGGAAACAGGATCAGCTGAGGATTCCGAAGC AGCTGCCTCCTGAGCTGTTTGGATGTCCAGCTGGTTTTAATGCACGGTGGTTGGATGTTGCTTGTGGTCGTGAGCATACCGCAGCAATTGCTTCCGATGG CTCACTTTTTACATGGGGGGCTAATGACTATGGTCAATTGGGTGATGGAACTGAGGAGCGAAGGAAACATCCGAAGAAAGTAAAACAACTAGGGTCGGAG TTTGTAAAATCTGTGTCCTGTGGAGCACATTGTTCTGCTTGCATTGCAGAACCTCGTGACAATGATGGTACTGTATCTACTGGGAGGCTCTGGGTTTGGG GACAAAATCAGGGATCAAATTTTCCTAGATTGTTCTGGGGGGCCTTCGAACCTAACACGGTTATTCATCAAGTGTCATGTGGAGCTGCCCATGTGGTTGC TTTGTCTGAGGCGGGCCTTCTACAAGCTTGGGGATACAATGAGTGTGGCCAACTTGGCCGAGGTGTTACTTGTGAAGGACTTCAGGGGGCTCGTATTTTA AGTTCTTATGCTAAGTTCCTTGATGAAGCCCCCGAGCTTGTGAAGATTACCAAAGTGTCATGTGGGGAATACCACACAGCAGCCATTTCTGATAAGGGCG AGGTTTACACATGGGGGCTAGGAAATATGGGCCAACTTGGGCATTCTTCACTCCAGTATGGGGATAAGGAGCTTCTCCCGAGGAGGGTGGTTTCCCTTGA TGGTATTGTCATAAAAGATGTGGCATGTGGTGGTGTACATACTTGTGCTCTGAGTAAAGAAGGAGCACTTTATGCTTGTGGCGGTGGTCAATCTGGTCAG TTAGGCCTTGGCCCCCAAACTGGATTGTTCTCTTGTGTAGCTAATGATTCTCAGACATTTTTCCGAAACATTCCCATTTTAATTGTTCCAAAAGATGTGC AATTTGTTGCATGTGGACATTCCCATACTCTTATTTCTACGAAGGAAGGTCGAATTCATGGGTGGGGTTATAATAATTACGGCCAAGCAGCCAATGAGAA ATGTACATATGCCTGGTATCCATCACCTGTTGACTGGTGCGTTGGGGAGATCCGAAAACTAGCTGCTGGTGGGGGCCATTCGGCTGTGTTGACCGATGCT TGTTCATTAAAGGAGCTGTGTGAGTTTGTTCTCGCAGATTGTATGACCTTATCAAATGCTGCTAAGGTCGAGGATATTGCTTCTAGAACTGGATCGGATG CTTTAGCACGCCTTTGCGGAAGACTCAGGTATTTTGTAGAATTAATAAGGCTCTGCATGAATTAATGAATATGAACAAAGATAAGGTTCTGCATATTTCA ATCATTTTCGTAGTGATTACCTAAGATTGATTAATATGCTTACCCTTTTTCTTACTTTGCTGTCCTTGTTTATGAAACTTGACTTCAAACTCTATTAATG ATTTGTGAGAAACAAAAGCACCACATAAAATGACCCTTTTCATTGATTTGCCTCCTGCAGTATTATGATATAACTGTCTCCCCTTTAGTTTATGTTTCTT TCATAATTTTTGCTTTGATGTTTTCGCAACGAATCGAATGACGACGATCTTATGACAATTTCGGCGTCGCAGAGAGTATTTGCTTATTAATGGTGGTGAT GATGAAGAGAACGTGGTCAGTAAAATCTGACAATATATGAAGTTAGTATTAATCACAATTTATTGTTGTAATGTAAATCTGTGTATTCAGAAGTTGTAAC TATGTTATTATTCTGTAACTAGTATCAATTGAATAAGGATTTGTACTTGACTATGTATAGACCATGAATATGCCAATATTGAATTTCAAACTTCTTTCTT TCTCTTTTTATTTCGGGAATAAAGTATCTATCGGTATAAGGAGATATGTTATCTTCTCCTACTAGTGAAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_171350; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_415288
| Blastp | Ultraviolet-B receptor UVR8 from Arabidopsis with 32.32% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin-protein ligase HERC3 from Homo with 33.67% of identity |
| Eggnog | regulator of chromosome condensation(COG5184) |
| Kegg | Link to kegg annotations (AT5G63860) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456541.1) |
| Pfam | Regulator of chromosome condensation (RCC1) repeat (PF00415.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |