Ll_transcript_415410

• Id Trinity: TRINITY_DN49694_c1_g2_i8
• Name Transcript: Ll_transcript_415410
• Sequence: CTAAAACCCCACTCATCTTCTTCTTCTACACTCTTGTTAGGGTTTTACCACGTTCATCTCACGCGCGATATCTCCTCATTTTATCGTCTTCTTCTTCATC TCGTCTCACGATATTTTCCACCTTCGTTTTTTCTCATCCACAAATAGGATATTTTTGAATTTAGGGCTGGAGCAACCATAATTATGGCGGACTTAGAAAA CTTGCTTTTGGAGGCAGCTGGGAGAAACCGACACTCTCTTCAGCCTTCGAGAAGAGGACACTATGCATATTCAGATGGTGGGAATGATTCTGGGGAGGAT TCTTCAGATGATGATCTTAATTATAATGACAGAAAGCCCCCTGGATCACATGTTCCTTTTAAGAAGAGAATAGATCCACCAGAAAGAGATGATGACGAGG GAAGTCAGGAAGAAGGGAATGATGCTGTTGACCATGATGATGGTGAAAGCAGTGATGAATCTAATCTTGGCGGTGATCTTTATAAGAATGATGTCGACAG GCGAAAGCTTTCTGAGATGACTGAACTTGAAAGAGAGATGATATTGTCAGATAGGGCTACCAAGAAGGGTGATAAAACTTTATTGGGGAAGATAGTGTTG AAGCGTGATAAGGGAAAGACATCTGTACCCAGAGAACAGACTCCACCACTCTCATCATCTCGTGTTCGTTCATCAGCCAGATCTGCTGACAGGTCAACTG CCAAGGATGATGCATTGAATGAATTGCGTGCAAAGCGGATGAAACAGCAAGATTCAGAAGCACACCACAGGTTGATAGATGCACCTAGAAGTTCAGGCTC TGGTCCTTTTTCATCAAAGCACAAACCCTTTACTTCAAAGAGTCTTGGTAGCTCAAGTGAGGGCGAGTCCCACAGTGACGATGAAGTGCCAAATGGATAT CGAGGAATCATTGACAGCGATGATATCAGGACAATATCTGGATTTGAGGTTCCTACTTTTGAGGATATAAAAGAAATCACCATTTGCAGATCAAAACTTG CAAAATGGTTAATGGAGCCTTTTTTTGAGGAGTTAATTGTTGGTTGCTTTGTTAGAGTTGGTATTGGTAGATCACAGTCTGGGCCCATGTACAGGCTCTG CATGGTGAAAAATGTTGATGCGACAGATCCAGATCGGCAGTATATATTCGAGAATAAAACTACACACAAGTATTTGAATCTTGTATGGGGAAAGGAAACT TCTGCTGCGAGGTGGCAGATGACCATGGTTAGCGACTCTGCTCCACTTCAGGGGGAGTTTAAACAGTGGGTTAAGGAAGTAGAGCGAGGTGGTGGCCGGA TGCCATTCAAAAAAGATGTGTTAGAGAAAAAACAAGCTATACAAAAGATCATCACTTATGTTTACTCAGCAGCTACTGTGAAGCAAATGTTACAAGAGAA AAAGTCGGCGTCAGCCAGGCCAATAAATATTGCGGCTGAGAAGGATCGGCTGAGGAAGGAGTTAGTAAAAGCACAAAGTATTCAAAATGAAGCTGAAGTG GAGAGGATCAAGACAAGACTGCAGGAATTGGAGGCATCCCGGCAAGCTCAGGAGAAGGACTCCAAAGCTTTGAGGCTTGCTGAGATGAACAGAAAGAACA GATTTGAGAACTTCAAGAACGCTTCTCAATTAAAACCACAAACTGCTGTTTTGAAAGCAGGGGAAGCAGGTTATGATCCATTTTCAAGGAGATGGACTAG GTCAAGGAACTACTATGCTGCCAAACCCAGTGAAGAGATAGAAGCTGCAAATAATAGTGCCACTGGCATAATGGCTGATACAGGCAGCAATGAGACAGGA GCAGCAGTGATAGCGGAGGGTGGCATGGTGGCTACTGCTGTGGCCTTGGAAGCTGCTGCCAGTGCTGGGAAGTTAGTCGACACAAGCGCTCCGACCAATC AAGGTACAGAGTCATATCTACTGCACAACTTTGACCTGCCCATTTCCTTATCTTTTGGGGGAGCCCAAGGAGTTCAGGCCGGATTTATGGCGAATAAACA AAGAATAGAGGCTACTGTTGGTGTTCGAGTTCCGGAAAATGATGGCAAGAGGCATGCACTGACACTGTCAGTTCGTGATTACAAGAGAAGAAGAGGCCTT CTTTGAAATTTTTTGCTACTACTCGAAGTATTTAATTTCTCAGGCTGACTCTTATATTAGGTTAAGTTGGTTTATATTATCTATGGTACTGTTATGCCCT TATATTACCAAGAATCTTGAATCTTTTCAAGTGATCAACATGCTTTTATTTTCTTTCCGAACATCCATGTTTGTGTGATTGATTCAACATTGATTTTAAC TGGATGCTTGGAAAAGAAAAAGATAGTAGAAAGTCAGGTCTCACTAACAAAATATTTTAAAAAATGAACTATTTTATGGAGTCTTTGTTTTGTTTCAATA ATATAAGTAAGAGCCTCGTGTACTGGAC
• Tissue: pods
• Gene name: LI_gene_171476;
• Additional information: details;

Expression of Ll_transcript_415410

FPKM

• PAB: 0
• PNAB: 0.6
• PS1: 0.4
• PS2: 0.3
• PS3: 0.2
• PW1: 0.2
• PW2: 0
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_415410

• Blastp: Protein RTF1 homolog from Arabidopsis with 60.98% of identity
• Blastx: Protein RTF1 homolog from Arabidopsis with 60.7% of identity
• Eggnog: Rtf1, Paf1 RNA polymerase II complex component, homolog (S. cerevisiae)(COG5296)
• Kegg: Link to kegg annotations (AT1G61040)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019424592.1)
• Pfam: Plus-3 domain (PF03126.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;