Ll_transcript_415616

• Id Trinity: TRINITY_DN49698_c6_g1_i8
• Name Transcript: Ll_transcript_415616
• Sequence: TTTGTTTACTTACCGCGACTCAATGAAATCTTCAACGATTAACATGAAAATCACATGTGCAGTGTTGAAATTTTTTAAATAAAGAAATGCATATTATTAC TCTTATCAGATTCAATCTCTCTCTACCTTTTTACACCAATCCTCTCCTTTCAATCTTGTTTTTTTTCAGTTCCACGTTCTTCCCTCAACCTTCGATCCAC GAACCATAACACTTCAATTTTCAACTTGATGATTGATCAGCTCAATTAACTTCTCTTCTGTTTGCCCTTCTATTTTTATTTTTTATATCACTTCAGTTAA GTGAGGTATTTGAGGATGGTTACTCAATATAGGAAGGTGGCATCACGAGACGGAGTATGATGAAGCTTGGGAGAGATTATTTGTGAACTGCTTTTATAGG CTTGGATATAACAATATGGAAGATGATAACGGGTTGGAGCTGAGCTTGGGTCTATCTTGTGGTGGTTCTTCTGTCAAATCGAAGAATAAGGATGGTAGCT CCTCGGATACTAGGACAAAAGAGGTTGGTAGAAGTGGCAAAAAAGTTGATGATTTTAAAGGCATGTTTGATGCTGCTCCTCAGAAATCAGATTCAGGTAC TGGGATGGGAAGATCTGATTCTTCAAAACATGAGGAGAACTTCTTTAGTGACCTTTCGAAGGGTAGAGAAGAGAGTGCACCATTGAGTTTAAATCAGAAA GGATTTTGGGCTGCAAATAGTATTAAACCTGTTGAGTTTGAGGAAGACAAACAGTTAGAAGCAGTAAATAAACGGAAAATGTCTTTTGATGACATAAGTA ATCAAAAGAAGCATGAAAGTGGTGTTCATTATGCTGATTTACACGACAGGACCAGAACACCACACATTTCTTTGACGGAAGATGGCTCAGCTGCTGAAAA CGAAGATGTGGCAGATTCTGAAGTTGAGAACTCCACCTCTAGGCCTATCTCACACCACGACGATGGTTCTAAACAATTCATGAGAGGTAATGTTTCTTTT GATGCTCCAAAAAATGTTCGCGAAGTTGCTGACTCGAGTGCCACTAATGGGGAGAAAAGGTTACCAGGTTCATCAGAAAATGATTTTAAGAATACAAATT TGACTTATGGTGCTTCCTATTCTGTCCAACAAGTAAATATGATGAATTTGACTTACCCTACACCAGTTAAAGAGTCCAACTCTGTCCGTGCACCGAGCCC TCAGACATCTGGAGCGATGCATGTGATGCCTACTGCAACTGTTGAACACTCAGGAGCCCATACTGTAAGTAGTGGAAGCTTGCCAGTGATGTTTGGCTAT CCTTCTGTTCAGCTTCCGATGTTAGATAAGGATAACTCATGGGGTTCGGTCTCTTGTCCTCAACAGCTACACCCTTCCTTTGCTGGGAAGGGTCCACCAA ATGCAGCTGCCATGCGTGTAATCCCAAATAAAACATCTGAGGCCATGGCATATGAAGGAAGATCACTAGAAAGACCCAAAGTTGGTGCAAAGCAGCGCCT CACTGAAGAAGGCTCTTTCACACAACCTGAAGATGTGAAAGGTAGCAGCACAAACTTGAGGGCAAAAGATGTATCAGACCAACCAACAGGAGAAGAGTCC ACAATTGATTTTTCAGTTATTAAACCAGGTCTTGCTGCAGATCTTAAATTTGGTGGCGGTGGTTCCTGCCCAAACCTACCCTGGGTATCCACCACAGGTT CAAATGGTAAGACAATATCCGGTGTTACGTACAGATACAGTACTAATCAAATTAGAATTGTTTGTGCATGTCATGGTTCTCACATGACTCCTGAGGAGTT TATTCGACATGCAAATGATGACCAACCCAATCCTGAGGGCGGTGCAGTTTTGGGAGCAGTAGCAAATGGCAATCCTGCAGGCTCTGCTCACAGGTAGGTT ATTGTAATATCAAAGTTGAAGTTCGCCGATAGCTTTTAACGGGAGAATCTTGGAAATCAAGCTTTAACTTTATGTAATCAAAGAGATTCCTTACAATTTT TTCCATGTATAGATGTTGTGAAGCTACCTTCTATTAGTTGTATTTGCGCCGCAATCAAGGTTGCAGCAACAAGATGTTGTGGTTTCCTTTTTTGCCACCA AAAATAGTAGGTAGTATTAGCTATGCAATCAGGATTGCAGTTGTATGCAATATTAATAGCCTAGTATCTCTTGAAATGGTAACTAAGCACTTGATTTTGT GGGTGTATGAGTATATCCACTTATAAATCATGTAGGAGTTAACATCACAAATCATTTTAAATTAAATGAATGGTGAGTTCATAAGTATTCTGACAAGCAA AAGCTTATTTTCGATTAATATTTTTCGACTTTTATCACTGAAAGTTCCCCATTTTAG
• Tissue: pods
• Gene name: LI_gene_171518;
• Additional information: details;

Expression of Ll_transcript_415616

FPKM

• PAB: 9.4
• PNAB: 17.2
• PS1: 20.7
• PS2: 8.3
• PS3: 13.6
• PW1: 23.4
• PW2: 14.9
• PW3: 11

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_415616

• Blastp: Ninja-family protein mc410 from Nicotiana with 48.54% of identity
• Blastx: Ninja-family protein mc410 from Nicotiana with 48.17% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (107806815)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019446356.1)
• Pfam: TPL-binding domain in jasmonate signalling (PF16135.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;