Ll_transcript_455175

• Id Trinity: TRINITY_DN49700_c1_g2_i1
• Name Transcript: Ll_transcript_455175
• Sequence: CCTGACTGTCTTTTAAGGAAATTATGATGATGATATAATATATATACCCCATCCAAAATGTGAGTTTTTCAATCTGTTTGGACAAAAGTTGGCCTCTAGT TATTGGTGGTTGCAGTTTCTTTGTGAAAGTTTCATAAAGCTGATAAGATAAAGCCAATTGTATAGAAATACCACTTATTTGCATGCATATACAAAAAAGT TTCTTATCTATTGTGCATGTATTTATCTTTTCTATCATTTGCCACAGTTATGTTGAACTTTTCAAGGCTCTAATGGTTTGAGAAATTGGTTATGGTTGTT TTAGGAAATGGGTGGAGGTTGGTTTTGGAAATTTAGGATTTTTCTATCACCTAAAGCTCCATGATAGTTAGATTAGGACTCATAGTTGCTGCTTCAATCG CAGCTTTTTCAGTTAAGCAGTTGAATGTGAGAAGCTCAAAACCAGACCATGGTGAAACATTGCTTATTAAACAGCATGAAGATGAGGTCACAGAAGAAGA GCAGGTCACTAGTTTTACTGATGTTCTCAGAGAGCTGGATAAGGAGGAGGAGGAAGAGGAGAAAGAGGAGGTTAAATTAATTAGCAGCATAATTAATCGA GCTAATGATTATGACGAAGATGAAATTCTACCTGAATTTGAAGATCTTCTTTCCGGGGAGATTGAGTTTCCATTACCTACTGATAAGGCCAAGAAAGACA AAGTTAATGAAATTGAGATGGCAAACAATGCCATTGAACTACAGCAATTGCGACAGCTAGTGAAGGAATTCGAAGAGAGGGAAGTTAAACTTGAAGGAGA ATTGCTTGAGTACTATGGTTTGAAGGAACAGGAATCAGACGTTGTCGAGTTACAAAGGCAACTGAAAATCAAGACCGTAGAAGTAGATACGCTTAACGTT ACCATCAATTCCTTGCAGGCAGAGAGGAAGAAGCTCCAAGAAGAGCTCAAAAATGGAGCCAATAAAGAACTTGAGGTGGCCAGAAACAAGATCAGGGAAC TACAAAAGCAGATACAGGTTGAAGCTAGCCATACAAAAGGGCAGCTATTGTTGCTTAAACAACAAGTTTCTGGTCTGCAGACGAAAGAAGAAGCGGGTGT AAAAAAAGATGCGGAGATTGAAAAGAAATTGAAGGCTGTGAATGACTTAGAGGTTGAACTAGTGGAGCTTAAGAGAAAAAACAAAGAGCTTCAATATGAG AAGCGCGAGTTAACAGTTAAACTCACTTCTGCTGAATCTAGAGTCACTGAGCTCTCCAATATGACAGAGAGTGAAATGGTCGCCAAGGCAAAAAAAGAGC TCAGTGATCTGAAGCATGCAAATGAAGACCTGCAAAGACAAGTGGAAGGACTTCAGATGAATAGATTCAGTGAAGTTGAAGAGCTTGTATACCTCCGTTG GGTCAACGCATGCTTGAGGTATGAACTAAGGAATTACCAGGCCCCGCCAGGAAAATTATCAGCACGTGATCTCAACAAGAACCTTAGCCCGAAATCACAA GAGAGGGCTAAGCAGCTGATGTTAGAATATGCCGGATCAGAACGCGGTCAAGGGGACACAGATCTTGAAAGCAACTTTTCCCATCCTTCTTCACCAGGAA GTGAAGATTTTGACAATGCTTCTATTGATAGCTCCACTAGCAAATACAGTAATGTTAGCAAGAAAACTAGCTTAATCCAAAAGTTCAAGAAATGGGGTAA GAGCAAAGATGATTCTAGTGCTCTTTCATCACCATCCAGATCTCTTTCGACAGGTTCTCCAAGAAGAATGAGTATGAGTGTTAAACCAAGGGGTCCACTA GAATCCTTGATGCTAAGGAATGCTAGTGATAGCGTAGCCATCACTACCTTTGGGCAGATAGATCAGGAGCCAAGTGATTCTCCTAAATCTCCTACTACTA CTAGTGACTCCTTAAATTCTGTTGCATCTTCATTCCAATTGATGTCTAAGTCAGTTGATGTGTCCGTGGATGAAAAGTATCCTGCGTACAAAGACCGTCA TAAGTTAGCGTTAGCTAGGGAGAAACAAATTAAAGAAAAGGCTGAGAAAGCAAGAGTACAGAGGTTTGGTGACAACACAAATTTGAGTATGGCCAAGGCT GAAAGAGATAGATCTATACCTTTGCCACCAAAACTTAATCAAATAAAGGAGAAGACTTCATTTGTTTCTGGTAGTCCAAATGATCAATCTGATGATGGTA AGAATGTCGATAATCAAAGCATTAGCAAGATGAAGCTTGCGCAAATTGAGAAAAGACCTACTAGGGTCCCTAGGCCACCTCCTAAATCATCTAGTGGTGG TTCTGTTAGTACAAATTCAAATCCTTCCGGTGGAGTAACGTCCGGTACACCACCACCACCTCCACCACCTCCAGGTGCTCCACGACCACCGCCACCACCA GGTGGACCACCTCCCCCACCTCCTCCTCCAGGAAGCCTATCAAGAAGTGCAATGGATGGTGACAAAGTTCATAGAGCTCCACAGCTAGTTGAGTTCTATC AAACATTGATGAAAAGGGAGGCAAAGAAGGATACTTCATCATTATTAGCTTCTTCAACAAGTAATGCATCTGATGCCAAGAGTAACATGATTGGGGAAAT TGAGAATAAATCAACGTTCCTCTTAGCCGTGAAAGCTGATGTAGAAACACAAGGTGACTTTGTCATGTCCTTGGCAACTGAAGTTCGAGCAGCCACCTTC TCGGATGTTGAAGACTTGGTTGCCTTTGTGAACTGGCTAGATGAGGAACTTTCCTTCCTGGTCGACGAACGAGCTGTCCTCAAGCACTTCGATTGGCCTG AAGGGAAAGCAGATGCACTAAGGGAAGCAGCTTTTGAATATCAGGATCTGATGAAATTGGAGAAGCAAGTCACCACCTTCACTGATGATCCCAAACTCTC ATGTGAAAATGCTCTGAAGAAAATGTATTCATTGCTTGAAAAAGTGGAAAATAGTGTATATGCACTCTTGCGGACAAGAGATATGGCTATTTCGCGGTAC AAGGAATTCGGAATCCCAGGAAACTGGCTGTCAGATTCAGGAGTTGTGGGCAAGATCAAGCTTTCTTCTGTGCAACTGGCAAAGAAGTACATGAAACGTG TTGCATCTGAGCTTGATATATTATCTGGACCTGAGAAGGAACCAACTAGAGAGTTTTTGGTTCTGCAAGGAGTGCGTTTTGCTTTCCGTGTTCATCAGTT TGCTGGAGGCTTTGACACAGAGAGCATGAAGGCTTTTGAAGATTTAAGGAGCCGCATCCATAATACTCAAGCAGGAGAAGATAATATACCAGAAACATAG TGTGTCCATCACAGTATTTTTATCAAGTTAAGATCCATTTAGTTCTACCAAAATTCAGGTGTGTATCAATTTCGTCCGTGAAATGGTTCCCAACGATATC AAATTTGGTCAAATTAGTCATTTACTATTTTTATGATTAAGTTTTGGGACACCATAATCCTATCGGAAACTACTTTGATGCATGTTTGCGATCTGTAGTA GTTTGTATATTTATATTTTCGAGATGAAATTGGTACACACGAGAAATTTACAAGGACCAAATTGGGTATTTGTTTTATTTTTTTCCTTGTAATTGTTTCT CTTATATATATACATATGTTGCATTAACATCTTGTATACTTCATTTTGCTTGTTCAATTTGTATAGTTTATACATACTGGATGCTATACAATGATAAAAG AAGCATATTATAATGATAACTCCAACCTCATGGTAAATTGAGATTCAACTGATCAAAATATATAATACTTCAATCAAATGTTG
• Tissue: pods
• Gene name: LI_gene_171536;
• Additional information: details;

Expression of Ll_transcript_455175

FPKM

• PAB: 11.4
• PNAB: 8.5
• PS1: 0.8
• PS2: 7.5
• PS3: 3.5
• PW1: 3.7
• PW2: 16
• PW3: 18.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_455175

• Blastp: Protein CHUP1, chloroplastic from Arabidopsis with 68.45% of identity
• Blastx: Protein CHUP1, chloroplastic from Arabidopsis with 63.42% of identity
• Eggnog: Chloroplast unusual positioning(ENOG4111F63)
• Kegg: Link to kegg annotations (AT3G25690)
• CantataDB: Link to cantataDB annotations (CNT0000365)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019429886.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;