| Id Trinity | TRINITY_DN49706_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_454675 |
| Sequence | GGAATAATGACTTTTGTTTTATACAACTAGTTGAAAAGTTAAAAGATAGAAAAAGTTACAAGGTTAAGCTTAAGCCTTCGTTTGGATAGACAGAGTTGGA AGAGAAAGAATAAGAAGGAAGGGAAGTGCGAGAGAAAGGGGGTTTCCCCCATTTGGTTGAGAAGAAAGAGGAGGAGGAGATAAAAGTGATGTGGGACCCA TCAATTTTTTTCTCTCCAGAGATAAAGAGAAAGATAGAGAATTGAGTTGTATTATGTGAAATACCCCAAAAGCCCTTAACCTAAATTACCTTACACACTA GTTATTGGCAGCAACTTTTCTTCTCCTCATTATCTCTGCTTGTGGAAGCTTATTGGTATGCATCAATCTATTCTTTTCTTTCTTTGTTTATGAATTTTCT TCTTCACTATCATATATGTGTGGATTTGTTGCATGTGAATGTTTTCTTCTTTATGGTAGTTGTTACTCAATATTGGGGATTTGCCATTTGTTATATATAG GTTTCATTGTCATTTGTTTGTGGATTTCCTTTTTCATTGTGATGGTTTTTCATCTTCTTTCTTCTTCTTCTTCTAATTTGCTTCAAATTTCTGCCATTTA CTGCATTTCTGTCAATTTAAGTTATTGCACTAATTTTCTGAAATAGCATGGAAGGTGTTTGTGTTAATGCCTGTGTCAAATTGATTATTATGAAAAGAGA AGGAAATTATTATGGCTTGTAAACTTGATTATTCAAGGTTGAGTGGTTATTTGAACATTTATAAATCACTTTCAACTTCACATCATTTGTAATTTATAAC ACTTTAGTAATCTAAACATGAATAAGGCTACCAGAACATATCACAACATATCACTACTTGTGTTTGAGGTTGTTTAGTATACAATTCTTTTTTCATATAA ATATGTGGTGACTTTTTCGATTTTTATTTTTTACAAGTTGTTGGTTAGCATATTATACATATATTCCGCATATTTATCGAATTTGTGTTAATTTTTTCTT CATGTGTAAAAGGTATTTTTCATATTGTTACATGGAGAGAGTGATGGATGTAGATAATGTGAAAGAGGTCGTTAATGATGACCCAATGGAATTGATAAGT GAGGTGGACTTGGATATAGACGAAATATTTGATAATCAAATGACAGAAATGCAAATCATTAATCATACTTGCCAAGAGTTGGAAATGAGGCAGTATATAG GTGCTATTATCCTATTATGTAATGTTGTTCATGCATTGCATTTGCTTGAAGTTTTACCCACATGTCTACATAGTCGAGTAGGTGATTCTACACAAAGAGA CCGTTGGCGTCATCAGCTAATGAGTTCTCTAGTACAGGGACGATGGTGTCGAGATGTTATACGCATGAGATCTCAAGCCTTTTTGCGCTTATGTCAAAAA CTAAGAAGTACTGGTATAGTAAAGGATACCATACGGTCTACATTAGAGGAGCAAGTGGCAAAATTCTTACAAATTGTAGGATAAAATGCTAAAAATAGTG GCATTTCTTTTCTCTATCATCGCTCTGGAGAGACTGTTAGTCGCCACTTTCATAATATTTTGCATGCTATCATTTCATTAGAGGGAGAGTTTTTGGTTCA ACCATCAGGTAGAGATGTCCCTCCATAAATACTCAACAAAAGCATATTCTATCCATTTTCAAGGTGCTGTTGTATATTATTTAGTTGTGATTATTTAAAT TATATACATCATTTATAAAACTAATTTGCTAAAAATTTATATTAACCTGGGATTGTATTGGAGGTATAGATGGTACACATATTCGGGTGAAGGTCCCAAG GGCAGAAGCCCCTCGTTTTCGTGGGAGGAAAGAGTTTCCCACACAAAACGTCTTTGCCGCATGTGATTTTGATATGAAATTCACTTATGTCTTAGCTGGT TGGGAAGGGACAGTATCCGACTCTAGAATATTAAAAGATGCTTTAAGTAAGGAAGATCCCTTAAAAATTCCTGAAGGAAAATTTTATATTGGGGGTGCGG ATTTTATGCTAAAACGCACATTATTGACGCCATATAGAGGTGTGCGTTATCATTTGAAGGAGTATTCTGCTCATGGCCCACAAAATTCTAGAGAACTATT CAACCATCGACATTCTTCCCTCATAAATGTCATCGAGAGAACTTTCGGTGTATTAAAAAAAAGATTTCCAATTATATCTAGTGGCAGTGAACCACATTAT TCATTTGAAACAATGAGGGACATAGTACTTGCTTGTTGCATACTGCATAACTTTTTAAGGGGTGTGGATGATGATAGATCCTTAATTGCTGAAGTCGATC ATGAATTGCTTCAACAAGACATAGATGGATCTCAAACACAACAACGTGATGAAGACTATAGAGAAGGAGAACTTTTAAGTGACAATATTGCAAATGAAAT GTGGAATGCTTATCAAGTTTAATGTTGTTGTGTCATGCTTCCAATGTTTTTATTCATGTAATTAGTAGTCGTTTCACAATATAGACTATATTATGGATTT ATGTTGATTTCTATTTAGATATTTTGTATATTAAGATGCCATGTAATTTGTTTGATTTTAGTAATGATATGGCATTATTTTCATTTTGTTGGACTCCTAT TATACTTTCTTCTATTTTCTTGCAACAAATGCTTGTGTAGGTTAAAAGATGCCAAAAGGGACAGTTCAAACTACAGGTCCTAATCAAAATGTTAATATCT TGAGGTGGACTGATGAGATGGACGAAGTGTTGATGAATGCATTCACTGAGGAGCTAATAAAGGAAAATAGGCATGATGGCTCATGGACATCTGAAGCATA TTCCAATGTGGTCAAAGTTTTACAGCATGCTATTGCACCAAATATGACAAAACAACACATAAAAAACCGAATGAAAACATTGAAAGAACACTTTGCTGAG TCATATGATCTATTCAACAATCTAAGTGGATTTGCATGGAATCCGATGACTAAGAGGTTTGAGGCTGAGGATGAAGTATGGGAAGGTTTTATAAAGGATA AACCCCAAGCTATTAAGTGGAGAACTATGCAAATAAAGCACTATGACACATTAAAGGAGCTTTTTGGGGCTGATCGAGCGACAAGAAAACGAGCTTCAAC TGCTAGGCAAAGAGCCCCACAAATGCAGCATGATAATATTAACTTTAATGATGCTCAAGATGACATTTCTATGCCTGAACAAGTTGTTGATGAGCTTGAT GAAGGGCATTTTCACCCCCAAATTTGGAATCCCTTAGTCCAACTTATGCACAATCACATCATACTATTGGAACATCAGGCTCCCCAGGAACAAAGCGTAA GGCGCAAATGATTGAGTTAGTGGAGGGTCAATTAGAGAAAATGTCCAGTGGACTTGAACTAGTAGCTGATGCTTTGAATAAAGGTAATTGTATTTCTGAT AAATTGCATGATGTAGCTGACCGTCAAGTGGCGATAGCTGACCGTCATGCAATCATACCTGAACGCCAAGTAACAGCTATTGAGAAAAGGAATGAAATTT TTCAGAAGTAGTTGAACATCATCCAGCATACTAGGTTGCGTGTCTATAGTGAAGCAGATGTGTGAGATTTACTTACTGAATTAGACGTGATTGATCCATA CCGCATGCGCTGCTATGAGTATCTATGCACTAATGAGCAAAAGAAGTGCCAACTTTTTGGTGTTCCACCCTATATATGCATGCAAGCTCTGATTCAAATG ATGAATGACAGTGGATACCACT BLAST |
| Tissue | pods |
| Gene name | LI_gene_171587; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_454675
| Blastp | Uncharacterized protein At2g29880 from Arabidopsis with 30.23% of identity |
|---|---|
| Blastx | Putative nuclease HARBI1 from Rattus with 31.36% of identity |
| Eggnog | at2g29880 (e(ENOG41116NG) |
| Kegg | Link to kegg annotations (AT2G29880) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415865.1) |
| Pfam | Myb/SANT-like DNA-binding domain (PF12776.6) |
| Rfam | - |
| GO | - |