Id Trinity | TRINITY_DN49725_c0_g1_i1 |
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Name Transcript | Ll_transcript_455148 |
Sequence | GTGTACAGTTTTTTTTTATTTTATAATTTATAGTGGCGATTATAGAAAATAAGAATCACTATTTAGTCATGAAGTTCCAAGTAGGAAATTTGATATTAAT GCCTCTGCTTCATTTTTGTTGTGTATTTTTTTTTTTGTTTTCTCTAAGGAGAAGGTTAATTCTCCTTTTTTTTTTGTACTGTTTCCTTCTTTCCAATGAA TTTCTTCTTTTGCCCTAATTCCAAAAAGAAAAGGGTAGAAGTTATTAAAAATAAAAACCTGATATTCCTTCTTACTATACATTTCATATATGCCTGAGCT GATTTACAGGAGTTAGATCAAGTGAATAGCATATCTCTAGCTGACACAGCATCAGTTCCCCCGTCTAGAAATGATCTGATCAGTACTTCAGAGCAAGTTT TGGTCTCAGATACTCCATTACATTCATCTCCAGCACAGTTACAGTCCCTTAGGTCTTTCGATTGGATAATTTCTGAGGTGCAATTTTCTTTTCAATACCT TACGAAAAGGAGAGATAAGAGGCTTTCTTCATTGCCATCTAGTAAGCATAGATGTGGAAAAGCTGATGTCAAAAGCTGCTATACAGCTGCAACTCTGAAG CTTTCACAACTGGAAACTGAAGAACAGAAAGAAAAGGCTTTAGCTTTAGCAACTACTGAACTGGAAAAACTTTTCAAGAAGGAATACTTCAGAAGCATGA AGGTGATTGGGCAATTCAATCTTGGATTTATCATTGGTAAATTGGATCAAGACTTATTCATCGTAGATCAGCATGCTGCTGATGAGAAGTACAATTTTGA ACGTCTATCACAATCAACCATCTTAAACCAACAGCCTTTGTTTAGGCCACTAAGAATGGAGCTATCCCTTGAAGAAGAAATAGTTGCTTCAATGCACATG GATATAATCAGTACACAAATGTTGCTGAAGCTTTGTCTTTTACTTCTTCATTTAATTAACTGGGTTGTCAGAATGAACTGCCAGATGCTTGTCTTCTGCT TATTGGAAGAATGGATTTACTTTGGAAGAGGATCCAAATGCACCGCCTGGATGCCGTTATAAGTTAACATCTGTCCCCTTCAGTAAAAACATAATGTTTG GAGTTGAAGATGTTAAGGAGCTGATCTCTACCCTGTCTGATGAGCATGGGGAATGTTCCATTATTGGTAGTTATAAATTGGATACCTCAGGCTCTATTTG CCCTTCGAGAGTTCGTGCAATGTTGGCTTCCCGTGCATGTCAATCATCAACTATGGTTGGTGATCCACTTGATAGAAATGAAATGCAGAAGATAGTGGAG CATTTGGCTGAACTAAAATCACCATGGAATTGTCCCCATGGCAGGCCAACCATGCGCCATCTAATTGACTTGACTACAATTCATAAGAGCTCAGAACTAA CAATGTAGAGATGTAGATTCGTTATGAACTTTTGATCTAATTGCCATTGGAACAGTAAGTAACTCTGTAACTTATTTTGTACAATTACTGTGTCCGAAGT GTTGGTCTTGAAAGAGTATGCTTGGTGCAATAGTGCTGAGCTTCTTATTGGGCAGTCTTACCTCTTGACATTGTGTTCATTTGCTAATGGTGTCTTTTTA AATGCTTTACCATTTGAGTCAACATATCATTTGTACTAAAATAATTTGAAGTATAATAAAAGGGGAGAAACATATGAATCTATATATGATAATTAATTGA GTATAATGATCTTAACTATTCAACATCTTCAATGATTTAGATTGATGTTCATTATGCAAAAATGAGGAACTCAACCCAGTAAAAATTTAAAACATTCAGT TTCAAAAAAGTACCAACATTAATTCTCAAATTTTAGTGAGCCAGCTATAAGTACTCTAAAATTGCTGATAGATTCACAACAACAGGAAAGTTTTTTTCTA TTAATTACAAAGGCAGTCGAATTCTCAAAAAATCTAATGTCTAAGTGACCCAGGGGATATCCAACAATTGTACTACTGGAAAACAAATAAGCTTTTTAAA AATTGAATTAAATGAATATCTACTCTGAAATATTCAGCAATATTTTTAAATAAGATTTTGTAAATTAATTATGACATTTTTTAATCATGTTAAAAAATGT AAAAAAGAAAATGCAGGTCGAGGAGGCTTCATAGCGCCTTAGTAGTAATGATATATAAAAAAATAAAAAATGAGAAGAGAAAGTGACTCCACACTTCACA ACTTAGTTGAGTGAGTTTCCAATAGCACTTCATAGATTGTTCGAAAGCATTGAAAATTATTAGGTTAGGTTTGAATCATTGTATTTAAATTATAGAAGAA AAGAACGAGAACAACACAATAGCGATCAACCTCTCTCTCTTCACAATAAAACGATTTACGTAATCACACAGCATTTCCACTTCAACCTTCGATTTACAAC ATGGTATGTCACTCTTTCTCTCTCTGTTTCCCAAAGTTCATTCCTTTTTTAACCTACAACTAATGGGTACCTAAATCTATTAGGGTCCATTCACTGTTAC TTTTGTCTCTCACTCTTTACTCTCTTCTATTGTTGCAGTTGCCCCTTTCTCTTCTCAAAACTGCCCAAGGGCATCCAATGGTCACTCACCCCTTTTGCTC CTTTTTACCTCTTTTTTTACAATTCAACCTAACTTATTTAAGTTTTGGATTTTGAAATTTTTAATTTTTTAATATTGTATCAGTTGGTGGAACTGAAAAA TGGTGAGACTTATAATGGGCATTTGGTTAATTGTGATACATGGATGAACATCCATCTCAGAGAAGTTATATGCACCTCTAAAGATGGAGATAGATTTTGG CGTATGCCTGAATGCTACATTCGTGGCAACACGATTAAGTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAGGAGGAATCCAAGAGCCGCACCG ATCGCAAACCTCCTGGTGTGGGACGTGGAAGGGGAAGAGGAGGTAGCCAGGATGGTCCTGGTGGACGTCCAGCAAAAGGAATTGGGCGTGGTGTTGACGA AGGCGGGGCTAGAGGGCAAGGAGGAAGCCGAGGAGGAAGGGGTGGCATAGGTGGAAAGCCTGGTGGAAACAGAGGTAAATCACCCCCTTCATTATTCCAA AATTCGTTCACTGCATGCATGTATACCAACTGTTAGTTTTTCGGCTTATAACAATCGATATGAATATTTTGGCTTCCATCTCTCAAATTTCTTATGAAGG AGTTCAAAGTAGTCCATGCTATTTTCATTTATTTTGCCTGGATGAGCTCCTGATGAATTCATCAATGTAAAAAGTAAATTATTACTAAAGGAACTCAATG TCTTATGTTCCCTTGTTTTGATGTTTAAGGGGAAAACGGGTATGGGAGTTTGAGTTATAGTAGAGAGAAGGTATATGTTAGTAAGTTAAATCCCAATGTA GTTCAACTTTGTGTTGGAATCCTATATCACTTACCTGAGGGTATTATACGCGATCCAATGAATAGCTAATATAAAATAAATCATGTCCCCATTCTTCCAT CCCTTCCAACATGTTACGTAGCATACATCGTGTGAATGAATCTCGTTCAATATTTTTGCTTATTCTGATAGCTGCAGGGCGAGGCAGGGGTTGATTTGAG TAAGTGATGTTGGAACTACTGCAGTTTGATGAGTTGCTACTTTTAGAGCCATTGGTGCTCGTTCATCAAATTTGGCCGATTCTGTTTCCTGTGCATACTT GGATTTTATTTTTTCGATGTTTTTCTTGCGCTCGTGGTCTCGAAAATGGCGATATTATAGAATTTACAAAAGCTTCTATTCAGACAATATTTTATAATGC CTTCTCTATGGTAAACTTGCTTTTGTGTGTTAGTTATTGAATAGCTCCAAACTTGCTATGGTTGGAAATGCTCCTTCCCAAAATTGAATTCATGTTCCAG TAATTTTGAAGGCATAGAATATGATATTATTCATTTTGTCATGTTCTATCTTTATTCTTGCCACTGCTGAAGCCTGAACTAATAGAAAAAATAATTTGCT TAGCATGCCTTAAATTTAGGCTATTTGTACTCGATTTTGTGTATTGGCGCTCTCTTACTTACTGCAAACTTTGATTTGCTGAAGTGCGCTTTATTGATTG ATATTTTTAATAACATAAATTTCTTTTTTATTGTTTGTAGTGACCTATTTACTCAGTTTTATTATATCTAACAATTTTACAAAAGGAATTG BLAST |
Tissue | pods |
Gene name | LI_gene_171738; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_455148
Blastp | Probable U6 snRNA-associated Sm-like protein LSm4 from Nicotiana with 84.88% of identity |
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Blastx | DNA mismatch repair protein PMS1 from Arabidopsis with 72.5% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019441764.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |