Ll_transcript_455160

• Id Trinity: TRINITY_DN49725_c0_g1_i13
• Name Transcript: Ll_transcript_455160
• Sequence: GTGTACAGTTTTTTTTTATTTTATAATTTATAGTGGCGATTATAGAAAATAAGAATCACTATTTAGTCATGAAGTTCCAAGTAGGAAATTTGATATTAAT GCCTCTGCTTCATTTTTGTTGTGTATTTTTTTTTTTGTTTTCTCTAAGGAGAAGGTTAATTCTCCTTTTTTTTTTGTACTGTTTCCTTCTTTCCAATGAA TTTCTTCTTTTGCCCTAATTCCAAAAAGAAAAGGGTAGAAGTTATTAAAAATAAAAACCTGATATTCCTTCTTACTATACATTTCATATATGCCTGAGCT GATTTACAGGAGTTAGATCAAGTGAATAGCATATCTCTAGCTGACACAGCATCAGTTCCCCCGTCTAGAAATGATCTGATCAGTACTTCAGAGCAAGTTT TGGTCTCAGATACTCCATTACATTCATCTCCAGCACAGTTACAGTCCCTTAGGTCTTTCGATTGGATAATTTCTGAGGTGCAATTTTCTTTTCAATACCT TACGAAAAGGAGAGATAAGAGGCTTTCTTCATTGCCATCTAGTAAGCATAGATGTGGAAAAGCTGATGTCAAAAGCTGCTATACAGCTGCAACTCTGAAG CTTTCACAACTGGAAACTGAAGAACAGAAAGAAAAGGCTTTAGCTTTAGCAACTACTGAACTGGAAAAACTTTTCAAGAAGGAATACTTCAGAAGCATGA AGGTGATTGGGCAATTCAATCTTGGATTTATCATTGGTAAATTGGATCAAGACTTATTCATCGTAGATCAGCATGCTGCTGATGAGAAGTACAATTTTGA ACGTCTATCACAATCAACCATCTTAAACCAACAGCCTTTGTTTAGGTGAGGAGATTATATTCATTGTTCTTTTATAATCATTATATTATGGGCATTATTT TGGCACCCATTGTTTTTTCTTGGGTATGGGACCCATCAAGTATTTCATTTGCTTAGACTGTCAACAACATGGTAGAAGGATATTGCTGATTCTGATGCAA ACTTACGGTAAAGGTAAACAAACTTGTTGAGTTCAGAGTCGGAGTGCTTAGAGTAGAAGCTTTGTTTTTTTCAAGCACTATTATCGTAAATGGACGATAT ATTTTCCACACTGCTTAGACAGGACATGTAGAGTAGTTTCCCTCTTCTCTTTATTTGTTCATGATCTAAACTCTACAAAGGTCTGAACCGTTGTCCCAAA TTACATATGCAGGCCACTAAGAATGGAGCTATCCCTTGAAGAAGAAATAGTTGCTTCAATGCACATGGATATAATCAGGTAAAATAGAGCCGTCTTGATT TTACTTAGCTAAGGTTGTTTCCTAAACTAGATTTATTTGCCAGGATCTCAATATCCACCCTGCATCAATTAGACTGCTTATGTTTACTGTTTACTATTGC CAGTACACAAATGTTGCTGAAGCTTTGTCTTTTACTTCTTCATTTAATTAACTGGGTTGTCAGAATGAACTGCCAGATGCTTGTCTTCTGCTTATTGGTA CACCAATATTGCTTGATCTGGTCCCTCTTGCATTGCCGGTTGCTTTTGTCTATGGAAATTTCATTGAAATTGAATATATTGTTTTAGTTATGAAATTTAA TTAATTTTTCGTCCCATCCCTGTGTCTTTAAGGTTTTAGTGACATGCATTTCCATTGTATCAATTTTTTCAGGAAGAATGGATTTACTTTGGAAGAGGAT CCAAATGCACCGCCTGGATGCCGTTATAAGTTAACATCTGTCCCCTTCAGTAAAAACATAATGTTTGGAGTTGAAGATGTTAAGGAGCTGATCTCTACCC TGTCTGATGAGCATGGGGAATGTTCCATTATTGGTAGTTATAAATTGGATACCTCAGGCTCTATTTGCCCTTCGAGAGTTCGTGCAATGTTGGCTTCCCG TGCATGTCAATCATCAACTATGGTTGGTGATCCACTTGATAGAAATGAAATGCAGAAGATAGTGGAGCATTTGGCTGAACTAAAATCACCATGGAATTGT CCCCATGGCAGGCCAACCATGCGCCATCTAATTGACTTGACTACAATTCATAAGAGCTCAGAACTAACAATGTAGAGATGTAGATTCGTTATGAACTTTT GATCTAATTGCCATTGGAACAGTAAGTAACTCTGTAACTTATTTTGTACAATTACTGTGTCCGAAGTGTTGGTCTTGAAAGAGTATGCTTGGTGCAATAG TGCTGAGCTTCTTATTGGGCAGTCTTACCTCTTGACATTGTGTTCATTTGCTAATGGTGTCTTTTTAAATGCTTTACCATTTGAGTCAACATATCATTTG TACTAAAATAATTTGAAGTATAATAAAAGGGGAGAAACATATGAATCTATATATGATAATTAATTGAGTATAATGATCTTAACTATTCAACATCTTCAAT GATTTAGATTGATGTTCATTATGCAAAAATGAGGAACTCAACCCAGTAAAAATTTAAAACATTCAGTTTCAAAAAAGTACCAACATTAATTCTCAAATTT TAGTGAGCCAGCTATAAGTACTCTAAAATTGCTGATAGATTCACAACAACAGGAAAGTTTTTTTCTATTAATTACAAAGGCAGTCGAATTCTCAAAAAAT CTAATGTCTAAGTGACCCAGGGGATATCCAACAATTGTACTACTGGAAAACAAATAAGCTTTTTAAAAATTGAATTAAATGAATATCTACTCTGAAATAT TCAGCAATATTTTTAAATAAGATTTTGTAAATTAATTATGACATTTTTTAATCATGTTAAAAAATGTAAAAAAGAAAATGCAGGTCGAGGAGGCTTCATA GCGCCTTAGTAGTAATGATATATAAAAAAATAAAAAATGAGAAGAGAAAGTGACTCCACACTTCACAACTTAGTTGAGTGAGTTTCCAATAGCACTTCAT AGATTGTTCGAAAGCATTGAAAATTATTAGGTTAGGTTTGATTTATTGAAGTAGGAAAGAAAGAGAACAATAGAACAGGGAGCGAGCAACAATCTACGAC ATGCTTCCCCTTTCTCTTCTCAAGACTGCCCAAGGCCATCCTATGTTGGTGGAACTGAAAAATGGGGAGACATATAATGGGCATTTGGTTAATTGTGATA CATGGATGAACATCCATCTTCGAGAAGTCATTTGTACCTCTAAAGATGGAGATAGATTTTGGCGTATGCCCGAATGCTACATTCGTGGCAACACAATTAA GTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAGGAAGAAAGTAAGAGTCGCACTGATCGCAAACCTCCTGGTGTGGGACGTGGAAGGGGTAGA GGAGGTAGCCAGGATGGTCCTGGTGGACGTCCAGCAAAAGGAATTGGGCGTGGCTTTGATGAAGGCGTGGCTAGAGGGCAAGGGGGAAACCGAGGAGGAA GGGGTGGCCTAGGTGGAAAGCCCGGTGGAAACAGAGGTGCAGGGCGAGGTAGAGGTTAATTAAGTGGTCTGGAACTCTACTTCAGAAGGGCAGGTTGCTA ATTTTAGAGGCATTGGTGCCGTTCAGCAGATTTTACCGACCGTATTTCCTGTGAATTCTTGGATTTTGTTTTTCCAATGTGTTTTTTATTGGCAAAAATG GTGACACTATAGAATTTACCAGAACTTTTATGCTAACAATATTTTATAATGCATTTCTCTATGGTAAGCTTGCTTTTGTATGTTTGTTGTTGAATAGTAA TTACTCTCCAACCTTGCTATGTTTGGAAATGTTCCTTCTCAAACTTGATAAATGTTCCTTCTCAAACTTGATAAATGTTCCTTCTCAAACTTGAT
• Tissue: pods
• Gene name: LI_gene_171738;
• Additional information: details;

Expression of Ll_transcript_455160

FPKM

• PAB: 0
• PNAB: 0.5
• PS1: 0.1
• PS2: 0.2
• PS3: 0.3
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_455160

• Blastp: Probable U6 snRNA-associated Sm-like protein LSm4 from Nicotiana with 89.26% of identity
• Blastx: Probable U6 snRNA-associated Sm-like protein LSm4 from Nicotiana with 89.26% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441764.1)
• Pfam: LSM domain (PF01423.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;