| Id Trinity | TRINITY_DN49725_c0_g1_i19 |
|---|---|
| Name Transcript | Ll_transcript_455166 |
| Sequence | CCCGCCTAAAAATTGATGAGGGTTTTGTGTGGTGAGTGCGATCCAACACGAAAGAGTGTTAATCAATTGTGCGTTTTGAGAAGCAATGTCAGTTCAACCC GAAAAGACGATAAAGCCCATCGACAAAGGCATCGTTCATCGAATATGCGCCGGTCAAGTCATCACCGACCTCTCCTCCGCCGTCAAGGAACTCGTCGAGA ACAGCCTCGACGCCGCCGCCACCACCATCGAAATCAACCTCAAAGACTACGGCCAACAATCCCTTCAGGTCATCGATAACGGCAACGGCATTTCCTCTCT CAATTTCAAGGTTCTCGCGCTTAAACATCATACTTCAAAATTAGAGGGATTTCATGATCTTCAGTCTCTTACCACTTATGGATTTAGAGGTGAGGCTCTC AGTTCTATTGCTGCTATGGCGAACTTGAGTGTTGAAACTAGAACCGTGAATGAATCAGTCGGTTCGAACTTGACTTTTGACCATTCTGGTGTTCTGATTT CTGAATCCAAAATTGCACGCAAAGTTGGCACCACTGTTACTGTTAAAAACTTGTTCGCCAATTTGCCTGTTCGCAGCAAAGAATTTAGTCGTAATGTTCG CAGGGAATATGGCAAGTTGGTTTCTCTCCTGAATGCATATGCCCTTATAGCAAATGGTGTTCGCTTTGTCTGCACCAACACTACTGGAAAAAATGCAAGG TCAGTGGTACTTAAAACACAAGGAAATGGTTCTCTTAAAGATAACATCATCACAGTGCTTGGCATAAACACTTTCAGCTGCTTGGAGTCTGTCAGTATAT CTTTATCTGATAGTTGCAAAGTTGATGGTTTTCTTTCCAAGTCTGGACAGGGTAATGGACGCAGTTTGGGAGATAGGCAGTATTTTTTTGTAAACGGCAG GCCAGTGGATATGCCTAAAGTCAGCAAACTTTTGAATGAGATATATAAAGGTGCAAACTCTAAACAATATCCCATTGCAATCTTAAGTTTTACAGTTCCT ACAAGAGTGTACGATGTCAATGTGACTCCTGATAAGAGGAAAATATTTATTTCTGATGAAATTTCCATATTGCAAGCTCTGAGAGAGGGTTTACAAAAAG TTTATTCTCCTAGTGATGTTTTTTATTCTGTTAACAAAGTTGAACAGCCTGCTGCAGAAGAAGACAGCGTTGAATTGTTTTCTTCTCAAAGGAAGTCCTG TATCATAATTAAACCCTCATCTCCAATTGGAAGTCTTGGTCGGGAAGAGGATAATACTGAGTGCAGTAATAGTATTATTTCTCAGGATGAGCATATGGAG GAGCATAATAGTGATCGTAAGAATGTTAGTGTTTCTCAGGATGAGTATAACAATGATAGAAATTCTGGGCATGTAACCCATTCTGACAATGCTTCTGGAT TTGCTGTTGATGATCAGCACTTACATTCGAAAGAAGGGTTAATTCCTGAGAATGAAAGGAGTTTAATGAGCCCAGAGTTCACACTTAGAGCGCACAGTGC TCTAAAGGATGATAAGAGAACAATACGATCAAGACAACATAGCAGTAATATACTTGATCAAGCTGCTCATGTCTCAAGGACAGTTGAGAGTGGGGCCACT TCTGATAATTATTCTTATAATCATTCAAGACATGTTCAATCAACTCTTAACAAATTTGTTACTGTAAATAAAAGAAGCTATGATAACACCATGACAGCAT TATCTGAAGTGCCCGTCCTTAGAAGTCAAGGTCCTCATTGTCAAATGAGGTCTACAAATACTGAAAGACGTAACCTGATTACAAGATTACCTTATTTTGA GCAAATTGATGAATCTGCTAAGACGAATCAAGGTCCCCATTGTCAACTGAAGACTGCAAATACTGAAAGACATAACCTGATTACAAGATCACCTTATTTT GTTCAAATTGATGGAACTGCTAAGGCGAGTGAGATTAAATCTTTGCAGCAACTTAAATCTTCTGGAGGTGATTATACTGGCGAAGAGCCTAATATGGAGT TAGATCAAGTGAATAGCATATCTCTAGCTGACACAGCATCAGTTCCCCCGTCTAGAAATGATCTGATCAGTACTTCAGAGCAAGTTTTGGTCTCAGATAC TCCATTACATTCATCTCCAGCACAGTTACAGTCCCTTAGGTCTTTCGATTGGATAATTTCTGAGGTGCAATTTTCTTTTCAATACCTTACGAAAAGGAGA GATAAGAGGCTTTCTTCATTGCCATCTAGTAAGCATAGATGTGGAAAAGCTGATGTCAAAAGCTGCTATACAGCTGCAACTCTGAAGCTTTCACAACTGG AAACTGAAGAACAGAAAGAAAAGGCTTTAGCTTTAGCAACTACTGAACTGGAAAAACTTTTCAAGAAGGAATACTTCAGAAGCATGAAGGTGATTGGGCA ATTCAATCTTGGATTTATCATTGGTAAATTGGATCAAGACTTATTCATCGTAGATCAGCATGCTGCTGATGAGAAGTACAATTTTGAACGTCTATCACAA TCAACCATCTTAAACCAACAGCCTTTGTTTAGGCCACTAAGAATGGAGCTATCCCTTGAAGAAGAAATAGTTGCTTCAATGCACATGGATATAATCAGGA AGAATGGATTTACTTTGGAAGAGGATCCAAATGCACCGCCTGGATGCCGTTATAAGTTAACATCTGTCCCCTTCAGTAAAAACATAATGTTTGGAGTTGA AGATGTTAAGGAGCTGATCTCTACCCTGTCTGATGAGCATGGGGAATGTTCCATTATTGGTAGTTATAAATTGGATACCTCAGGCTCTATTTGCCCTTCG AGAGTTCGTGCAATGTTGGCTTCCCGTGCATGTCAATCATCAACTATGGTTGGTGATCCACTTGATAGAAATGAAATGCAGAAGATAGTGGAGCATTTGG CTGAACTAAAATCACCATGGAATTGTCCCCATGGCAGGCCAACCATGCGCCATCTAATTGACTTGACTACAATTCATAAGAGCTCAGAACTAACAATGTA GAGATGTAGATTCGTTATGAACTTTTGATCTAATTGCCATTGGAACAGTAAGTAACTCTGTAACTTATTTTGTACAATTACTGTGTCCGAAGTGTTGGTC TTGAAAGAGTATGCTTGGTGCAATAGTGCTGAGCTTCTTATTGGGCAGTCTTACCTCTTGACATTGTGTTCATTTGCTAATGGTGTCTTTTTAAATGCTT TACCATTTGAGTCAACATATCATTTGTACTAAAATAATTTGAAGTATAATAAAAGGGGAGAAACATATGAATCTATATATGATAATTAATTGAGTATAAT GATCTTAACTATTCAACATCTTCAATGATTTAGATTGATGTTCATTATGCAAAAATGAGGAACTCAACCCAGTAAAAATTTAAAACATTCAGTTTCAAAA AAGTACCAACATTAATTCTCAAATTTTAGTGAGCCAGCTATAAGTACTCTAAAATTGCTGATAGATTCACAACAACAGGAAAGTTTTTTTCTATTAATTA CAAAGGCAGTCGAATTCTCAAAAAATCTAATGTCTAAGTGACCCAGGGGATATCCAACAATTGTACTACTGGAAAACAAATAAGCTTTTTAAAAATTGAA TTAAATGAATATCTACTCTGAAATATTCAGCAATATTTTTAAATAAGATTTTGTAAATTAATTATGACATTTTTTAATCATGTTAAAAAATGTAAAAAAG AAAATGCAGGTCGAGGAGGCTTCATAGCGCCTTAGTAGTAATGATATATAAAAAAATAAAAAATGAGAAGAGAAAGTGACTCCACACTTCACAACTTAGT TGAGTGAGTTTCCAATAGCACTTCATAGATTGTTCGAAAGCATTGAAAATTATTAGGTTAGGTTTGATTTATTGAAGTAGGAAAGAAAGAGAACAATAGA ACAGGGAGCGAGCAACAATCTACGACATGCTTCCCCTTTCTCTTCTCAAGACTGCCCAAGGCCATCCTATGGTGACTGACCCTTTTGTTCTATTGTATTA CCTTATTTTTACAATTTAACATAACTCGTGCAAGTTTTGATTTTTATTAAGTTTTAAATTTGTTATTTTGAATATTGTATCAGTTGGTGGAACTGAAAAA TGGTGAGACTTATAATGGGCATTTGGTTAATTGTGATACATGGATGAACATCCATCTCAGAGAAGTTATATGCACCTCTAAAGATGGAGATAGATTTTGG CGTATGCCTGAATGCTACATTCGTGGCAACACGATTAAGTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAGGAGGAATCCAAGAGCCGCACCG ATCGCAAACCTCCTGGTGTGGGACGTGGAAGGGGAAGAGGAGGTAGCCAGGATGGTCCTGGTGGACGTCCAGCAAAAGGAATTGGGCGTGGTGTTGACGA AGGCGGGGCTAGAGGGCAAGGAGGAAGCCGAGGAGGAAGGGGTGGCATAGGTGGAAAGCCTGGTGGAAACAGAGGTAAATCACCCCCTTCATTATTCCAA AATTCGTTCACTGCATGCATGTATACCAACTGTTAGTTTTTCGGCTTATAACAATCGATATGAATATTTTGGCTTCCATCTCTCAAATTTCTTATGAAGG AGTTCAAAGTAGTCCATGCTATTTTCATTTATTTTGCCTGGATGAGCTCCTGATGAATTCATCAATGTAAAAAGTAAATTATTACTAAAGGAACTCAATG TCTTATGTTCCCTTGTTTTGATGTTTAAGGGGAAAACGGGTATGGGAGTTTGAGTTATAGTAGAGAGAAGGTATATGTTAGTAAGTTAAATCCCAATGTA GTTCAACTTTGTGTTGGAATCCTATATCACTTACCTGAGGGTATTATACGCGATCCAATGAATAGCTAATATAAAATAAATCATGTCCCCATTCTTCCAT CCCTTCCAACATGTTACGTAGCATACATCGTGTGAATGAATCTCGTTCAATATTTTTGCTTATTCTGATAGCTGCAGGGCGAGGCAGGGGTTGATTTGAG TAAGTGATGTTGGAACTACTGCAGTTTGATGAGTTGCTACTTTTAGAGCCATTGGTGCTCGTTCATCAAATTTGGCCGATTCTGTTTCCTGTGCATACTT GGATTTTATTTTTTCGATGTTTTTCTTGCGCTCGTGGTCTCGAAAATGGCGATATTATAGAATTTACAAAAGCTTCTATTCAGACAATATTTTATAATGC CTTCTCTATGGTAAACTTGCTTTTGTGTGTTAGTTATTGAATAGCTCCAAACTTGCTATGGTTGGAAATGCTCCTTCCCAAAATTGAATTCATGTTCCAG TAATTTTGAAGGCATAGAATATGATATTATTCATTTTGTCATGTTCTATCTTTATTCTTGCCACTGCTGAAGCCTGAACTAATAGAAAAAATAATTTGCT TAGCATGCCTTAAATTTAGGCTATTTGTACTCGATTTTGTGTATTGGCGCTCTCTTACTTACTGCAAACTTTGATTTGCTGAAGTGCGCTTTATTGATTG ATATTTTTAATAACATAAATTTCTTTTTTATTGTTTGTAGTGACCTATTTACTCAGTTTTATTATATCTAACAATTTTACAAAAGGAATTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_171738; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_455166
| Blastp | DNA mismatch repair protein PMS1 from Arabidopsis with 52.3% of identity |
|---|---|
| Blastx | DNA mismatch repair protein PMS1 from Arabidopsis with 51.67% of identity |
| Eggnog | This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity)(COG0323) |
| Kegg | Link to kegg annotations (AT4G02460) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441764.1) |
| Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |