Ll_transcript_455167

• Id Trinity: TRINITY_DN49725_c0_g1_i20
• Name Transcript: Ll_transcript_455167
• Sequence: GTGTACAGTTTTTTTTTATTTTATAATTTATAGTGGCGATTATAGAAAATAAGAATCACTATTTAGTCATGAAGTTCCAAGTAGGAAATTTGATATTAAT GCCTCTGCTTCATTTTTGTTGTGTATTTTTTTTTTTGTTTTCTCTAAGGAGAAGGTTAATTCTCCTTTTTTTTTTGTACTGTTTCCTTCTTTCCAATGAA TTTCTTCTTTTGCCCTAATTCCAAAAAGAAAAGGGTAGAAGTTATTAAAAATAAAAACCTGATATTCCTTCTTACTATACATTTCATATATGCCTGAGCT GATTTACAGGAGTTAGATCAAGTGAATAGCATATCTCTAGCTGACACAGCATCAGTTCCCCCGTCTAGAAATGATCTGATCAGTACTTCAGAGCAAGTTT TGGTCTCAGATACTCCATTACATTCATCTCCAGCACAGTTACAGTCCCTTAGGTCTTTCGATTGGATAATTTCTGAGGTGCAATTTTCTTTTCAATACCT TACGAAAAGGAGAGATAAGAGGCTTTCTTCATTGCCATCTAGTAAGCATAGATGTGGAAAAGCTGATGTCAAAAGCTGCTATACAGCTGCAACTCTGAAG CTTTCACAACTGGAAACTGAAGAACAGAAAGAAAAGGCTTTAGCTTTAGCAACTACTGAACTGGAAAAACTTTTCAAGAAGGAATACTTCAGAAGCATGA AGGTGATTGGGCAATTCAATCTTGGATTTATCATTGGTAAATTGGATCAAGACTTATTCATCGTAGATCAGCATGCTGCTGATGAGAAGTACAATTTTGA ACGTCTATCACAATCAACCATCTTAAACCAACAGCCTTTGTTTAGGCCACTAAGAATGGAGCTATCCCTTGAAGAAGAAATAGTTGCTTCAATGCACATG GATATAATCAGTACACAAATGTTGCTGAAGCTTTGTCTTTTACTTCTTCATTTAATTAACTGGGTTGTCAGAATGAACTGCCAGATGCTTGTCTTCTGCT TATTGGAAGAATGGATTTACTTTGGAAGAGGATCCAAATGCACCGCCTGGATGCCGTTATAAGTTAACATCTGTCCCCTTCAGTAAAAACATAATGTTTG GAGTTGAAGATGTTAAGGAGCTGATCTCTACCCTGTCTGATGAGCATGGGGAATGTTCCATTATTGGTAGTTATAAATTGGATACCTCAGGCTCTATTTG CCCTTCGAGAGTTCGTGCAATGTTGGCTTCCCGTGCATGTCAATCATCAACTATGGTTGGTGATCCACTTGATAGAAATGAAATGCAGAAGATAGTGGAG CATTTGGCTGAACTAAAATCACCATGGAATTGTCCCCATGGCAGGCCAACCATGCGCCATCTAATTGACTTGACTACAATTCATAAGAGCTCAGAACTAA CAATGTAGAGATGTAGATTCGTTATGAACTTTTGATCTAATTGCCATTGGAACAGTAAGTAACTCTGTAACTTATTTTGTACAATTACTGTGTCCGAAGT GTTGGTCTTGAAAGAGTATGCTTGGTGCAATAGTGCTGAGCTTCTTATTGGGCAGTCTTACCTCTTGACATTGTGTTCATTTGCTAATGGTGTCTTTTTA AATGCTTTACCATTTGAGTCAACATATCATTTGTACTAAAATAATTTGAAGTATAATAAAAGGGGAGAAACATATGAATCTATATATGATAATTAATTGA GTATAATGATCTTAACTATTCAACATCTTCAATGATTTAGATTGATGTTCATTATGCAAAAATGAGGAACTCAACCCAGTAAAAATTTAAAACATTCAGT TTCAAAAAAGTACCAACATTAATTCTCAAATTTTAGTGAGCCAGCTATAAGTACTCTAAAATTGCTGATAGATTCACAACAACAGGAAAGTTTTTTTCTA TTAATTACAAAGGCAGTCGAATTCTCAAAAAATCTAATGTCTAAGTGACCCAGGGGATATCCAACAATTGTACTACTGGAAAACAAATAAGCTTTTTAAA AATTGAATTAAATGAATATCTACTCTGAAATATTCAGCAATATTTTTAAATAAGATTTTGTAAATTAATTATGACATTTTTTAATCATGTTAAAAAATGT AAAAAAGAAAATGCAGGTCGAGGAGGCTTCATAGCGCCTTAGTAGTAATGATATATAAAAAAATAAAAAATGAGAAGAGAAAGTGACTCCACACTTCACA ACTTAGTTGAGTGAGTTTCCAATAGCACTTCATAGATTGTTCGAAAGCATTGAAAATTATTAGGTTAGGTTTGAATCATTGTATTTAAATTATAGAAGAA AAGAACGAGAACAACACAATAGCGATCAACCTCTCTCTCTTCACAATAAAACGATTTACGTAATCACACAGCATTTCCACTTCAACCTTCGATTTACAAC ATGTTGCCCCTTTCTCTTCTCAAAACTGCCCAAGGGCATCCAATGTTGGTGGAACTGAAAAATGGTGAGACTTATAATGGGCATTTGGTTAATTGTGATA CATGGATGAACATCCATCTCAGAGAAGTTATATGCACCTCTAAAGATGGAGATAGATTTTGGCGTATGCCTGAATGCTACATTCGTGGCAACACGATTAA GTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAGGAGGAATCCAAGAGCCGCACCGATCGCAAACCTCCTGGTGTGGGACGTGGAAGGGGAAGA GGAGGTAGCCAGGATGGTCCTGGTGGACGTCCAGCAAAAGGAATTGGGCGTGGTGTTGACGAAGGCGGGGCTAGAGGGCAAGGAGGAAGCCGAGGAGGAA GGGGTGGCATAGGTGGAAAGCCTGGTGGAAACAGAGCTGCAGGGCGAGGCAGGGGTTGATTTGAGTAAGTGATGTTGGAACTACT
• Tissue: pods
• Gene name: LI_gene_171738;
• Additional information: details;

Expression of Ll_transcript_455167

FPKM

• PAB: 1.8
• PNAB: 0.8
• PS1: 1.4
• PS2: 0.6
• PS3: 1
• PW1: 0.5
• PW2: 0.8
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_455167

• Blastp: Probable U6 snRNA-associated Sm-like protein LSm4 from Nicotiana with 89.26% of identity
• Blastx: DNA mismatch repair protein PMS1 from Arabidopsis with 72.5% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441764.1)
• Pfam: LSM domain (PF01423.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;