| Id Trinity | TRINITY_DN49758_c4_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_453549 |
| Sequence | CTTCTTTTTCCCTTCAAAATGCAAAATACTTTCTTATCATAGAAACCAGATTCGCTGGTTTAGTTGGAGAACTGTGTATCAGTTTGCCAGTACCGATTCA CGGTACTTTTGCGACCCAATACGCCTTGGTTCTCGTATTGGTACTTAGATTCAAGTGAACCACCATTAAAGATGTCATTTTCTTCATCCATGAACTTCAA ACCGTCCCATGTCTAATGATACAAAATCACCAACTGAATACCAAGGGAATACCAACGAGAATAACGCCAATAGAGAAAAAAAAAACAGAGAAAGAGAAGA GAAAAGATGAGCAGTAACCATGGAGAAGAATATGATAGGGGGAGGATAAAGATTAGGGTTTGAATGAAGTTGAGTTTTGATACTATCATACTACTGGGTA TTAGAGTATTGGGCCCAAAATACTCATTACTTCTCAATTTTAATAAAATTATTTCTTTAAAAAAATCTTTGAATAATTTGTTTTACAAAATGTAATTTAA CTCATTTATTTAGTTTTCATTAATCAAAATACACTTAAGTAAAAATAACCCAAATATTAAATCATATTACATCATAAATTATCCAAATTAAATAAAAAAT TTGAAGATATATTATTAATGAATAGTCAACCATAATATAAGTATGAAAATATCGAACATATTAACTAAATATACCTATAACGTAATGATACTTTGATAGG GTAACATATCGCGTATTACGTACCTGTACCCGTACCGAAAAGAACTGTGTATTATGTGACTATGTTTCTTATTTCTTTGATATTTGATTTGATTGGAATT TCTTTTATTTGTCACTATTCCTTTAATTGAAAATACTTAAAAGGAAGAATGAAATATGTGAATTGCTTGAGTGATTTGCATGCGCTCAATCGATTCTATT TATAGGGGAAGAGTCCATACATGATACATGAATCCCTTAATTTTAGGGAAATAAAATCAGAAAGATGGTTTGTGTAGTCAATTGCATGTGATCGCAATGT CATGTAAGGTTGTTGGCCCCTCCTCAAGACGAAACGACTGATAGCAATGCAACTTGTTGTCACGACTATTGTTGGTCGAGTCGTGCTCCATTTCACAGTC CAGAGCCCTCTACAAGTTGAAGGGCAAGTGAAACCCTATTTTTTAAATGAGAAATGTCTTTTTTGCCCTTATTTTTTAGCTATTAGTTTTTAGGGTTTTT TGATAAAAAAACTTTCATGTCTTTCCCCGTTTCCCTCATTTAAAACACACATGTTGTATAACAAAAACTTAACATTTTCCATTTATGCCCCACTTTTAAA ACCCTTCCATTTCTTTCTCTGCCTCATTACTCCCCCCCACCCTTCACCATCCCTCTCTATTTATACTCCTCTCTGCGTCATTTCCCCTATTTGCTTACTC CTCTCTGCTTCATTAATTCATTACTTTGCTGTAGCCTTATATGCTTAATCTTTATGTTTTGAAGCCTTAGAGCCTGATTTATAATACACTTATATTAAAG CCTTAGATGCTTAGACTTATTTTAGTTATTTTTTATGAATGCTTGTTTTGGTTATATTTTTTAATTTGGTGTATTTTTGTGCATTTACATGTGGAGGTAC CTAGGATAAAATACATGATATGATTTCATGATCATATATTTAATGTTAATCACATACATGATATGATTTAATAATCATATATATAATCATAGTCATATAT AGAATCTTTTAATTATCTCTACATCTACTTATCTCAATAGTCTGAACATTCTCAAGCTGGACCATCTATGTCGAATGCATCCAATTTGTCACATATATAC TATATTCTTGAATATTGGAGAGACATAATGAAGATATTTGCTAACTGATAATTGAAATTCATGAATGAATTACTGATCTCTCCTACATTAACCTTCCGGC GAATATATTGACAGTCCACCTCTATGCTTCGTCCGTTCATGAATGACTAGATTAGAGGTAATATATAAAGTTGTTTGATTATCACAAATGAGATTCGTAG ATTTGACTTTGCAGAACTTCAACTTAGAGGGAAGATGTTTGAGCCAAGCTAATTCTCCTGTAACAATAGGATTAATCTAACATTTCGTTTCTTGCTTCTC CATGAGATAAGATTACCACCAATGAAAATACAACAACCTGACATTGACTTCCAATCATTTGGGCAACCAACCCAATCTGCATCAGATGAGGTGTATCTGT ATGACCTCTGTTCTCAAAGACAAATCCTCTTTTAGGAGACCCTTTAATGTATCTCAAGATTCGAAGAATTGTATCCTAGTGATTGTCTAGTGGTGAGTTA AGGACTTGACTTATATTATAACACATACAACAAATGATATATTTGGTCTGGTCATAGTTAAATAATTTAGTTTCCCTACAAGCCTTCGATTCTCCTTGGG TTTGAATATGGTTTCCCCTTATTTGACATAAGTTTAACATTAAGATCAATTGGAGTATCAAAAGGCTTACAATCTAACATTCATGTGTCCTTTAGGATAT ATAGAGCATACTTCCTTTGGGATATGACAATACTTGCCCGTGATTGGGTTCCCTCAATGCTAAGAAATTAATGCAACAATCCCAGGTCTTTTGTTTTGAA GTGTTGAAGTGTTGCTTGAGACATTTGATTCCATGGTGATCATTTCCATTAATGACAATGTCATAAACATAAACTAGAAGATAAATACATTGACCAAGGG AGGAATGTTGATAGAATACAAAGTGATCTTTCTCACTACGGATCATACCAAACTTTTGGAGAACAAAGCTGAACCATGCTTTGGGAGACTGCTTAAGGCC ATATAATGACTTATGTAGCCTACAACAATCCCAGGTCTTTCGTTTCGAAGTGTTGAAATAAGTGTTGCTTAAGACATTTGATTCCATCGTGATCATTTCC ATTAACGACAATGTCATAAACATAGACTAGAAGATAAATACATTGACCAAGGGAGGAATGTTGATAGAATACAAAGTGATCTTTCTCACTACGGATCATA CCAAACTTTTGGAGAACAAAGCTGAACCATGCTTTGGGAGACTGCTTAAGGCCATAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_171969; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_453549
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 36.71% of identity |
|---|---|
| Blastx | Uncharacterized mitochondrial protein AtMg00810 from Arabidopsis with 30.43% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020205203.1) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |