Ll_transcript_454607

• Id Trinity: TRINITY_DN49764_c0_g1_i1
• Name Transcript: Ll_transcript_454607
• Sequence: ATTCAATCAGACATATATAATTGTGAATGGAAAGTTTACTTACTCCCCTTTCTAATTCATAAATTCCATTAATTTGTCATTACAATATTTGTCCATGTGG TGATATTTGAAAGGACCATTAATCTTCTCCTTTACAGTCAAATGCATGATTAATGGCTTATAATAATACTCACAAAACTGCTTAAAGCTGCCTCTTTTCC TGTGCCTACTTCTTCTTCCTCCACTCCACTTTTTCTATCTCTCTCTCTCTTCTTGCTTTGCCACTAGTGCTTTCCCTTCATTGGTCCCTGACCCTGTTCC CACTTTTGATTCAAGAACATGCTTGTGGCATTGCTCTTGCTGCTAGCATTGAGCAATGCTGTTAGAATTGATGCAGATGGTGGACAATGTGGTTCAAATC CAACACTAGATCCAAGACCACACAGTGTTTCAATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACACTAAACACTCTTGCATTTCAGAATGCCATCTT CTATCTCAAGTCATTTGCTGACAAGGGTGGAGCTCAGCTTTATGTACCACCCGGAAACTGGCTCACTGGTAGTTTCAATCTCACCAGTCATCTTACCCTC TTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTATTGAACCATTACCTTCTTATGGCCGAGGCCTTGAAGTTCCCG GTGGAAGATATCAGAGTTTGATAAATGGACATATGCTACATGATGTGGTCATAACAGGTAATAATGGAACCATCGATGGAGTCGGATCGGTTTGGTGGGA GTTGTTTGCCTCTCATTCCTTGAACTATAGCCGACCTCATCTAGTTGAAATTGTAGCATCTGAATTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCC CCTGCATATAGCATCCACCCAGTTTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTTCTCCGCCGGAATCTCCTTGTACTGTTGGTATAGTAC CAGATTCTTCGGATAGTGTTTGTATAGAAGATTGTGTTGTAACTATGGGATATGATGCAATTGCCCTTAAAAGTGGCTGGGATGAATATGGCATTGCTTA TGGCAGGCCCACTGAGAATGTACACATCAGAAAGGTGTATCTTGAAGCATTTTCTGGCTCTACTTTAGCATTTGGCAGTGACATGTCCGGGGGTATTTCA AATGTTCTCGTGGAGGATGTTCATATTTTCGACTCGAATAGCGGCATTGAGTTCAGAACCATCGAAGGAAGAGGCGGTTTTATAAAAGATGTTGTCATTT CCGACATACAAATGGAGAATGTCTATACCGCAATCGCCGCTACTGGTCATTGTGGCTCTCATCCTGATGATAAATTTGATCCAAATGCACTACCACTTTT GGATCACATAACCTTGAAGGATGTTACTGGTACAAACATAACCATTGCTGGAAGCTTTGATGGAATAAAGGAATCACCTTTTACTAACATTTGCCTTTCC AATATAACATTGTCTACCAATTCTGTTTCTACTAATACTTGGGAATGCTCAAATGTCTCTGGCTTTTCGGACTCCGTGTCTCCGAAACCATGTCCAGACC TTGCTAGCCCTTCAAATTCTTCCTCATCATGTTTCTCCTACTTGCTGAGTATCACTGGAGGAGAAACTTCAGTACTGTGATTATCCCCTCTCAACAGAAG ATTCAATATTCTTGAGTACCTTGCTTCATGAAAAAGTGAAAGGCCATTTGCAACTGAATATTAGGCTTCATTCTTTTCAATAAGACACTTGTTCGGATTA TTCAATTTTTCCCAATCAGCACATTATTTGTACAGTTTCATTTCCTCATCTATGAGTAAAGAAATTTTGGTAGTGCCACCACAAGAGGACTCAAAATTTG ATAGTTTTTGCATTGTTCCATTGTGATTTCACTGTAAAGCATGTTGGATTTGTGTGATACTTCAATTAAAGGAAATTTCTTCATGTTTATGCCATAAATA TATCCATGC
• Tissue: pods
• Gene name: LI_gene_172014;
• Additional information: details;

Expression of Ll_transcript_454607

FPKM

• PAB: 0.1
• PNAB: 39.1
• PS1: 7.8
• PS2: 5.8
• PS3: 8.4
• PW1: 10.1
• PW2: 5.1
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_454607

• Blastp: Probable polygalacturonase from Vitis with 48.61% of identity
• Blastx: Probable polygalacturonase from Vitis with 48.73% of identity
• Eggnog: Glycoside hydrolase family 28(COG5434)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440188.1)
• Pfam: Pectate lyase superfamily protein (PF12708.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;