Ll_transcript_454618

• Id Trinity: TRINITY_DN49764_c0_g1_i10
• Name Transcript: Ll_transcript_454618
• Sequence: ATTCAATCAGACATATATAATTGTGAATGGAAAGTTTACTTACTCCCCTTTCTAATTCATAAATTCCATTAATTTGTCATTACAATATTTGTCCATGTGG TGATATTTGAAAGGACCATTAATCTTCTCCTTTACAGTCAAATGCATGATTAATGGCTTATAATAATACTCACAAAACTGCTTAAAGCTGCCTCTTTTCC TGTGCCTACTTCTTCTTCCTCCACTCCACTTTTTCTATCTCTCTCTCTCTTCTTGCTTTGCCACTAGTGCTTTCCCTTCATTGGTCCCTGACCCTGTTCC CACTTTTGATTCAAGAACATGCTTGTGGCATTGCTCTTGCTGCTAGCATTGAGCAATGCTGTTAGAATTGATGCAGATGGTGGACAATGTGGTTCAAATC CAACACTAGATCCAAGACCACACAGTGTTTCAATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACACTAAACACTCTTGCATTTCAGAATGCCATCTT CTATCTCAAGTCATTTGCTGACAAGGGTGGAGCTCAGCTTTATGTACCACCCGGAAACTGGCTCACTGGTAGTTTCAATCTCACCAGTCATCTTACCCTC TTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTATTGAACCATTACCTTCTTATGGCCGAGGCCTTGAAGTTCCCG GTGGAAGATATCAGAGTTTGATAAATGGACATATGCTACATGATGTGGTCATAACAGGTAATAATGGAACCATCGATGGAGTCGGATCGGTTTGGTGGGA GTTGTTTGCCTCTCATTCCTTGAACTATAGCCGACCTCATCTAGTTGAAATTGTAGCATCTGAATTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCC CCTGCATATAGCATCCACCCAGTTTATTGCAGCCATGTACATATTAAAAATGTTTCAATCTCTGCTCCTCCAGAATCCCCTTATACTGTTGGTATAGTAC CAGATTCTTCAGATAGTGTTTGTATTGAAGATTGTGTTGTAACCATGGGATATGATGCAATTGCCTTAAAAAGTGGCTGGGATGAGTATGGTATTGCTTA TGGCAAACCCACTGAGAATGTACACATCAGAAAGGTGAATCTGAAAGCATTTTCCGGCTCTAGTTTAGCATTTGGCAGCGAAATGTCTGGAGGTATTTCA AATGTTCTTGTGGAGGATGTTCATATTTTCAACTCGAATAGCGGCATCGAGTTCAGAACCACCAAAGGAAGAGGTGGTTATATGAAAGATATTTTTATGT CAGACATACAAATGGAGAATGTCTATACAGCAATTGCAGCCACAGGCCATTATGGCTCTCACCCCGATGACAAATTTGATCGAAATGCACTACCACTTTT AGACCACATTACCGTGAAGGATGTTACTGGTACAAACATCACCAATGCTGGAAGTTTTGTTGGAATAGAAGAATCTCCTTTTACAAATATATGCCTTTCC AATATAACCTTGTCTACCAATTCAGTTTCTACTATTACTTGGGAATGTTCAAATGTCTCGGGATTTTCGGACTCCGTGTTTCCAAAACCATGTCCAGACC TTGAGAGCCCTTCAAATTCTTCTTCATCATGTTTTCCCTACTTGCTGAGTATCACTGAAAGAAAAACTGCAGTGCTGTGATTATCATTTCTCAATAGAAG ATTCAATATTCTTGAGTACATTGCTTGAAAAAACGAGCAGCGAATTGCAAGTGAAGATTAGGTCTCATTCTTTTCAATAAGACACTTGTCCGGATTCTTT TTTACCACTTAGATTTCCATTCTTCTATTTTGCTATCAGCACAATATTTGTACAGGTTTATTTCTTCATTCATGTGTAAGGAAATTTTGGTTGTGTCACC ACAGGAGAACAAAAAAAAAAGATAGCTCTTTGCAATAGTCCATTGTGACTTCACTGTAAACTGTGTAGTTGATTTGGTTAATACTTCAATTGATGGAAAT TTCAACTTTATGGCCATTAAAAT
• Tissue: pods
• Gene name: LI_gene_172014;
• Additional information: details;

Expression of Ll_transcript_454618

FPKM

• PAB: 0.2
• PNAB: 2.5
• PS1: 0.9
• PS2: 0.9
• PS3: 0.5
• PW1: 4
• PW2: 2.3
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_454618

• Blastp: Probable polygalacturonase from Vitis with 48.91% of identity
• Blastx: Probable polygalacturonase from Vitis with 49.75% of identity
• Eggnog: Glycoside hydrolase family 28(COG5434)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419433.1)
• Pfam: Pectate lyase superfamily protein (PF12708.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;