Ll_transcript_454380

• Id Trinity: TRINITY_DN49767_c0_g2_i15
• Name Transcript: Ll_transcript_454380
• Sequence: AAAAAATAAAACTTAAAAGCCAATGGTCACGTTGGCCAAAATTCCACCGCAAGTCTATACGTCCCCTTCCTCGGTAACCAGTGGAACAATCACGTAAGAA TAGGACCCCACCATCACTACACTTTACGTACCAGAAAACCTCCGCCAAGGAGTTTTGTGGATGAGATTCGAGCATAAAAGCTACTCCAAAATAGAAATAA AAAAAATAATAAATCCACAACAAATTATCGTGGCTGAGATTTCTCCTCACTCCATTGCAGTTCCTTCTACTTCAGTTCAGCTAAATTTCTATTCTCTTCT GGTTTTGTTTCACTTCGCGTTTCTTATTCTTACTCTTCTCTCTACCTTCTTCCGATTCAGATTTTTTATCCGTTTCCTAGTTGCCGGAAATGTCCCCTCC GGCGAGTGTCCACTGAGTTCGCATGCATCATCTTCCTCTTCCATGGATTTATTTCGAGGTTTTGAAGCAGTGAAGTTCGTTTTGTATCATCACCTTACAA TAACATTCTGGTTACTATCACTTTCACCACGACGGCTTTACTGTTCAGTGTGCTCCAAGTAACTAAAAATGAACGAAGGTATTTGTATTTCTTGTATCCG CTACTCGTCCGAGAAGATCTGAAGCAACGCTAGCAGCTCATGTCCTAGGATGGAAGCATACTCTTCTGGTGAAGAAATAGTTGTTAAGGCACGAAAACCA TATACAATCACAAAGCAAAGAGAAAGATGGACGGAGGAAGAACACAATAGGTTTCTACAAGCTTTAAAGCTTTATGGACGAGCATGGCAGCGCATAGAAG AACATATCGGAACAAAGACTGCCGTGCAAATCAGGAGCCATGCACAAAAGTTCTTTACAAAGTTGGAGAAAGAGGCCCTTGTTAAGGGTTCATCAATTGG ACAAGCTCTTGACATAGACATCCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCTCGGAAGACCAATGTGGGTGCCCCAACATATCAGGGT GGAGAAAGGGATGAAAAACTCATTCCAGTTGAATCTTCCCATGTTAAACAGACACTGGACTTTGAAAAAGTTCCACTTCTAGAGAAATATAATGACGGCA AAAGGCAAACACATGGAAAGGATAATAAGGATGAGAACTGCTCAAAAGTATTTCCTGTTCTCCAGGAGGCACCATGTTCATCATCTTCAGGAAACAAGAG CTCAATATCAATGTCAGCGCCACTGAGAAATTCATGCGCATTAAGGGAGATTATATATTCAGTGAAAGAGGCAATATCGCAAGATGAAACAAATGAATCT CTTGTCACTATTGAACCTGAAAATCGGAAGCTGGAGGTAGATGATGGGAAACAGACTAATGGTACCATTAAAGAGTCCCAGTTGGAGAATTGTGATGCTT CACAAGTGAAATTGGTTCAATGTGAGAAAACAGATGGTCTTAATTGCACTTTAACAATAGATGGAATGCAAGGAAATCAGAGTTATCCGAAACATGTTAC CGTTCATGTTGTTGATGGGAACCTTGGAACAAGTACTAAAAACCCATCCCTAGATATGTTGTTCCGGGATTCCATGTTTCAACCAATTGGAAAGGTTAAC GGGCAGCCTAATCTTTTCACAAATTCAACTGCATCAAACATAAGCGAAAATCAAAATAACACAGCACCATCTTCTATTCATCACCCATATTTTCCTTATC CTCCCTTTGCACAACATAATCGAGATGATTGCCAACCTTTTCTTCATCTGTCCACCACATTTTCAAGTCTAACTGTCTCTACCTTGCTGCAAAACCCAGC AGCCCATGCTGCAGCAAGTTTGCCTGCTACATTTTGCCCCTATGAAAATGCAGAAACTTCAGCAAATGCTCCTGCATGCTCTCAAGAAAGTTTTCTATCC AGACAAAGTGGCTCCCCTCCCAATGTGGAGGCTATTGCAGCTGCTACTGTAGCTGCAGCAACTGCATGGTGGGCTGCCCATGGATTGCTTCCAGTATGTG CTCCTCTCTATACTGCTTTTGTCTGTCCTACAGCATCAATGACTGCAGTTCCATCAATGAATATTGATGAAGCAACTGCACCAAACCCAGAGCTAGAAGA GAGTACTCTCCAAAATCCTCCTTTGCAACATCAGATACTGGATCCAGAACACTCAGAAGCTCAACAAGGTCAACATTCAGCTTCTAAGCCATTGACTGTT ATTTCATCAGATTCTAAAGAGAATGGAGATGGCAGTTTAAATACTTCATTAAAGGCTACCACCACTGATCATGAAATGGATACAACAATTTCCGAGAACT TTGATTCTGACAAAACAAAGATCAGAAAACAGGTTGATTGTTCCTCATGTGGTTCCAATACCACCTCTAGCAGCGATGTCGAGACTGATGCATTAGAGAA GAATGGGAAAGGGAATGAACAGCCTGAAGCACCTGAACCTGATGCTAACCATTTAATCACAGAGTCTAGTAATCATCGTAGTAGAAGCATTGTCAACCTT ACTGATCCTTGGAAGGAGGTGTCTGAAGAGGGGCGAATGGCCTTTAGGGCTCTTTTCTCCAGAGAGGTGTTGCCGCAGAGCTTCTCACAGCATGATTTAA AAAATAAGGATCATCAAATGGACAACATTAAGGATAACAAGCAAAACGTAGATAACAAATATGAAGACCTTAACAGCAAGGAATGGTGTTCTGATTGTGA AGGAATGCAGAAAAATCTGCCATTTCTAGAAAATGAGGAGAGGCTGCTAACCGTGGGGCTTGGACAAGAAAAGCTCAAGACTCGCCGAACAGGCTTTATA CCATACAAAAGATGTTCAGTGGAGGCCAAGGAAAACAATGTTGGAACAAGCAACATCCAAGCTGAAGACAAGGATTCTAAGAGAATACGCTTGGAAGGGG AAGCTTCAATTTGAGGTTTGTTGTTACATATGCATGCAATCTCATAAAGGGAACCTTTGGTTTTTGCATATAATTTCTTAATCCCCTTAAATGGTGTGCC TATTGTTTATTTCTTATTTTGAAGCTCATGAAACTTGTCGTGTAGAGATGTGTGTACCATGTTAAAATTCTATATATGCTCTTTTACTATCTTGGAGTGA TGTTACTGCTATAAAACTCTGCAAAGTTAGATAAGCAGGATACATTAAGAATTGTTTGAACGGTTGAACCTTAAGTAATTGATGATGTATCATTCAGCCA CTCCTATTTTACTTTTGACATCTATCTATGAGCTATTCTCCTCTTTTACAAACTATGCCCCGATTGAACAAATTTTCTCTTACATGATATGCTTGTATGA TGTGGCAAGTTACTCTTCATCTTAGCCATCGATTTTTTGGGTGAGG
• Tissue: pods
• Gene name: LI_gene_172040;
• Additional information: details;

Expression of Ll_transcript_454380

FPKM

• PAB: 24.1
• PNAB: 48.3
• PS1: 11.5
• PS2: 7.6
• PS3: 13.1
• PW1: 16
• PW2: 19.3
• PW3: 10.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_454380

• Blastp: Protein CCA1 from Arabidopsis with 38.47% of identity
• Blastx: Protein LHY from Arabidopsis with 62.64% of identity
• Eggnog: Transcription factor(COG5269)
• Kegg: Link to kegg annotations (AT2G46830)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461318.1)
• Pfam: Myb-like DNA-binding domain (PF00249.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;