Ll_transcript_454372

• Id Trinity: TRINITY_DN49767_c0_g2_i8
• Name Transcript: Ll_transcript_454372
• Sequence: AAAAAATAAAACTTAAAAGCCAATGGTCACGTTGGCCAAAATTCCACCGCAAGTCTATACGTCCCCTTCCTCGGTAACCAGTGGAACAATCACGTAAGAA TAGGACCCCACCATCACTACACTTTACGTACCAGAAAACCTCCGCCAAGGAGTTTTGTGGATGAGATTCGAGCATAAAAGCTACTCCAAAATAGAAATAA AAAAAATAATAAATCCACAACAAATTATCGTGGCTGAGATTTCTCCTCACTCCATTGCAGTTCCTTCTACTTCAGTTCAGCTAAATTTCTATTCTCTTCT GGTTTTGTTTCACTTCGCGTTTCTTATTCTTACTCTTCTCTCTACCTTCTTCCGATTCAGATTTTTTATCCGTTTCCTAGTTGCCGGAAATGTCCCCTCC GGCGAGTGTCCACTGAGTTCGCATGCATCATCTTCCTCTTCCATGGATTTATTTCGAGAACAATACCAAGAAGGTGATTGGTATAGCTAGCTTGAGACAT GGTTTGTTTGTCATCAGTCCAGTGCAAAGGGATCATTCATGTAATAATGTATCTCAGTCTTGTAATTCTGGTAGTTCCTCTAGTGACTTTAATCTTTGGC ATTTAAGGTTTGGTCATGCTCCTTTATTTTCAATGAAAAGTTTATCTAGTCAGTTTGATTGTATTCCTCCATGTAACAACAAACATGTTCCATGTGATGT CTGTCATGCTTCTAGACAGAAGAGATTACCTTTTTGTGATAGCAATACTCAATCAAATAAAGTTTTTCAGTTGTTGCATGTTGATATATGGGGTCCTTAT TCTACTACTTCTATTCTTGGTCATAATTACTTCCTTACTCTTGTTGATGACTTTACTAGGTTCACTTGGGTGATTATGATGAAAACCAAGAGTGAAACTA GGCAACATATCATTAGCTTTGTTGCCTTGATTGAAAACCAGTTCAGTGTTAAACTTCAGACCATAAGAAGTGATAATGATCCTGAGTTCTTGATGAATGA TTTCTTCTCTAATAAAGGAATCATTCATCAAAGATCTTGTGTTGGTACACCTCAACAGAATGGTGTGGTTGAGAGAAAACATCAACACATTCTATGTGTT GCTAGGGCCATTTTCTTTCAATCATCCTTGCCTACTAATCTTTGGAACTTTGCTATTCAACATGCTGTCCATATCATTAATAGGCTTCCTAGTCCTTTGC TAAAGAATTCTAGTCCCTATCAACTATTGTATGGTTGCCTTCCCTCTCTTAATTCCCTAAGAGTATTTGGTTGCTTGGTGTATGCAAGTACTCTTAGTGC AGGGAGAGGCAAATTAGATTCCAGGGCTACGAAATGCATGTTCATTGGATACAAGGAAGGATCCAAAGGTTTCATCCTATATGACCTAGTTTCTCATGAA CTTTTTATTTCTAGAGATGTTGTTTTCTATGAAGAACACTTTCCTATGTCAGCTGCTTCCACTACTCCTTCTGATCCTCTTGTTCATCATACTCATAATT CCAACATTCTTGAGTCAAACATTTTTTTTTTGATTGAGTCAAACACACAATCTGTCCCTGAGTCTCATTCTCCAACCTCAAACACATTTTCCTTTATTGA GTCAAACACACAATCTGTTCCTGAGTCCAATTCTCCAACCTCAAATTCTTCTTCTTTTGAGTCAGACACTACTTCTTCACCTGCTATTGTTCCTAGGCAA TCTACAAGACAGAGAAGACCACCTTCTCATCTTAATGACTACCATTGTAACCTTGCTCACACTGTCACAGAAACTGGCTCTTCCTCAAAAGTTGCTTACC CCTTATCTTCTGTTTTGGATTACTCCAAGTGCACTCCAGGGTATAAAAACTTTTGCCTAACCATCTCCAGTAGTTCTGATCCTACTACTTACAAAGAAGC AGTTGAATTCTCTCATTGGAGACAAGCCATGGACACTGAATTAGAGGCCTTAACCCAAAACAAAACTTGGTCCTTGGTGCCTCTTCCACCAGACAAGGCT ACCATTGGTTGTAAATGGGTTTACAAGACCAAAGTTCATGCTGATGGAACTCTTGAAAGACATAAGGCCAGGTTGGTTGCAAAAGGATACACTCAATTAG AGGGAGTTGATTTTTTTGACACTTTTTCTCCTGTTGTAAAGATTACAACTGTGAGAACTGTCTTAGCCTTAGCAGCAATCAAGGGATGGTTCTTGGAACA ACTTGATGTTAACAATGCTTTTCTTCATGGAGACTTACATGAAGAAGTCTATATGGCTCCTCCTCCTGGTCTTGTTCTAAATGATCCTAGTCATGTATGC AAATTGCATAAATCCCTATATGGCCTGAAGCAAGCCAGCAGAGAGTGGCATACCACTCTTTCATCTTCCCTCATTTCTTTGGGATACTCTCACTCTGAGG CAGATCAAGCTTTGTTTACCAAGGCTGATTCTCAATCATTCACTGCAATCCTGGTTTATGTAGATGATATGGTTTTAGCAGGGAATGATACTCATGAGAT CACTCAAGTCAAACAATTTCTTGATCACACTTTTAAAATCAAAGATCTAGGATCTCTCAGATTTTTTTTGGGGCTTGAAATAGCTAGAACCAAAGATGGC ATACATCTCAATCAGAGAAAATATGCCTTATCTCTTCTTGAGGAGACTGGAACTCTTGCTGCTAGGCCTGCAAAAGTTCCCTTTGATCCATCCCTCAAAT TGCAGCTTGAGCAGGGCAACCCTTACCATGATGTGTTAGGCTATAGAAGGCTAGTTGGTAAATTGCTCTATCTTACCATTTCTAGACCTGATATAGCTTA TGCAGTGCAGCAATTGAGCCTCTTCTTATGCAAACCTATGGATGCTCATTATAAGGCAGGCCTCAAGGTTTTGCACTATCTCAAAACTTCACCTGCACAA GGCTTGTTCTTCTCTGCCAATTCTGCTCTCAAGCTTTCTGGATTTGCTGATTCAGATTGGGCTTGTTGTTTGGATACCAGAAAGTCCATAACTGGGTTCT ACATTTTCCTAGGCTCTTCCTTGATTGCTTGGAAGTCAAAAAAACAGAACACAGTTAGTAGGTCTTCCACTGAAGCTGAGTATAGGGCTCTTGGTAGCAT TGCTTGTGAGCTGCAGTGGCTTAATTTTTTGTTCACTGATTTGCACATACCTTTGCTCAATCCTGCTTCAGTCTATTGTGACAATAGATCAACCATCTAT TTGGCTCACAATCCTGTGTTCCATGAACGTTCCAAGCATATTGAAGTGGACTGCCATGTGATTCGTGAGAAAATTCGTCAAGGCCTCATTCATCTTCTAC CAATCAGCTCCAAAGATCAATTGGCTGATGCCTTCACAAAACCTCTTCCTTCTGCTTCTTTTCTCAGTTTCATTTCCAAGCTGGGTTTGTGCTCCATCCA CGACCCAGCTTGAGGAGGGGTGTTGATTGTTGATTATTGCCTAATCTTCTTTGTATTTATCATAGCTTAGTGTTTTTGCTTCTTTTGAATCTAAGTTAGA TATTTTTCTCATTCTTTCCTTTTTCAGAAAGTTTGTTAGAGGCAGTTATAACTACTTACTATAAATAGTAGTTATGAATAAGAGTATAATTGAAAATACA AAAAATCAATTCTCACAGCTGGACTGTGTTACTTGAATTTTCAGTTGCTTTCTTATTATCTTTTCTCGGAAACCGAACAGGAGGATTGAAAATTTACAGT GATAGTGAAGTATTTTATTATATTGTTGACATGAGTAACTTATGATGTGAATAATAGAAATTGTTTTGTACTAATTGGAATTTCCCTCTCTTTTGATTTC TTGTTTCCACGTTTGAAAGGTTTTGAAGCAGTGAAGTTC
• Tissue: pods
• Gene name: LI_gene_172040;
• Additional information: details;

Expression of Ll_transcript_454372

FPKM

• PAB: 0.1
• PNAB: 0.1
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_454372

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 34.45% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 39.92% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_017415202.1)
• Pfam: GAG-pre-integrase domain (PF13976.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;