| Id Trinity | TRINITY_DN49768_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_453835 |
| Sequence | CTCGACGAGTTCTCTTCCTTGATGTACTATCTGCATTAATCCGAAGCTATCATGAGAAATGAAAAGAATAAAATAATGTTTAGTCTAATAAATGGCTTCG CATTTTCAGATAAGGTCCCATGGGCACGAGGAGCCTGGAAAGGATAGCCATTCATTTTCGCTAATCTATGCTAATGGTGAACGCTCTCTCGATCTGATAT GCAAGGATAAAGCACAGGTTGCTTTGTGGCTTGTTGGCTTGAAAGCAGTGATTTCTCGGTGCCAGCATCCTAAACCTTTTAGTAGTTTAAGAAGCTGCAA AGGGGTTCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTCCGAAGAAAGAAAAATCTTGGCCTTCTGGATGAATCTTCTCCATTTACACAGGTACATAGC GTATGCGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGATTTTCGTATGCATCTGATAACCTTTATTCCAGAACTCATGCCGTAAAAG ATCATTCAGTCCCGAGTTCACCTTACATTGATCCAGATATTCCTTGTAAGGTTGAATCACCATGTCTTCACAAGGAGTACAAGAATTTGTCTTATAGGCC TCTGATGCCTCCACCCTCCCCCCGGATACGAAATAACAATGTATTAAAGGATGTGATGGTATGGGGAGGAGGGATTGGAGGTCCATTAGGGATTGGGAAT GAAAAGTTTGTCAACCAACATGGGATTTATTCTTTAGTTCCGAAGTTACTAGAATCCACTATGATGTTAGATGTACAAAATATAGCTCTAGGAGGAAAAC ATGCTGTCTTGGTTACAAAACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAAATGATATTGACATTAGCTCTCCGAA AATAGTTGATTCTCTTAACGGTATCCATATTAAAAATGTTGCATGTGGTGAATACCATACGTGTGCTTTGACTGATTCCGGTGAAGTATATACATGGGGA AATGATGCTTGTAGTGTAGATTTGGCTGATGAATGGAGAAATAGAAGTCAGTGGATACCACAAAAACTTTCCGGTCCTTTATATGACATTAGTATTTCAA GTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCCATCTGTGGGCGGTTATTTACATATGGAGAAGGTACATTTGGCGTTCTTGGCCACGGCAATTG TAGGAGTTTTTCTCAGCCAAAAGAAGTCGAATCTTTGAGTGGTCTCAGAGTGAGGTCTGTTGCTTGTGGATCGTGGCATACGGCCGCTATTGTAGAAGTC ATTGCTGACCATTTTAGGTATAGTACTGCGAGTGGTAAGCTTTTTACATGGGGTGATGGAGATGAAGGGAGGCTCGGCCATGCTGATAATAGAAGCAAAC TTATACCAACATGTGTTTCACAGCTTGTTGACTATGATTTTGTTCAAGTGTCTTGTGGAAGAATGTTGACCGTTGCGCTTACTACTATGGGCAAAGTTTT TGCAATGGGAAGTGCAAAATTTGGACAATTGGGAAATCCACGTGCTAGGGACAAAGCAGTTATGGTTGAAGGACTTCTGAAAAAAGAGTTTGTTAAAGTG ATATCATGTGGTTCATATCATGTTGCTGTTCTGACTTCTGCCGGGAGTGTCTATACATGGGGCAAGGGTGAAAATGGTCAACTCGGGCTAGGAAATACTG AAGACAGATTCACCCCTTCTTTTGTTGAAACACTAAGAGATAGGCAGGTGGATGCAATAACTTGTGGCCCAAGCTTCACAGCCGCAATCTGTTTACACAA ACCTATTTCTATCAGTGACCAATCAGCATGTAGTAGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGTTTTCTATTC TGCCATGCATGTAGTAGTAAAAAAGCTATCAATGCATCACTAGCCCCAAGTAAGTGCAAGGCTTTTCGGGTTTGTGATCAGTGCTTCGATAAACCTCAAG GAAGTACATATTCTGGAATGGCGTCAAAGTCCGGAAGTTACAACACTCAACAATTACTGAAGCATCAAAACAAAATTTCCGATCTGACTGATGATAGGGG AGAAACAACAGTAGCACAGAGTGCCATGTCTCTTGGTCAATCATGTTACAGGAAAAGCATGCCGAGTGGACGGAAGGACTGGAAAAACCAACAAGAAAGC CAGCAGCATTTAGAAGATAATTCTTCTGTGTTGAGTGGAGTATCGCGATGGGGGCAAGTTCCATGCCCTGATTCGTTTAACATCAATTGTACAGAACGAT CAGTTATGCGTGTTTCTTCATCCAAAAATAAATTAGCCACTGTTTCACCAATAGAAATAGAATCTGCAGCATGCAACTTCACTACTGCTGAGACAGATAC AACAAAGTCAGATAAGATGCTCATAGAAGAAGTTCAAAGACTGGGAGCTGAGGCTAGAAGACTTGAAGAGCAGATTGAGCTCAAAAACCAAAAATTACAA GAGTGTCAACAAAAACTCGAGGAGAGTTGGCTTGTGGCTAAGGAGGAAGCTGCTAAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGC TTCATACATTATCAGGAAAAGATAATGGTGGACAAGAAGAAAAGGTTATACATGAATGTCTGCCTAATTTGGCTCACATACAAACAGATATCAAGAGTCC AAAAGTTAGCAACATGGACAGTCTATCAAATTCACCTATAGTATTTTCCGATACACTAAAATCCAAAATTGGGAGAAGTATGCTCCTTAAAAATGATAAA TTATCGGAGAACTTGAACTTCAATAGAGCAGAACCACAAGAAGACAGCAACAGCTTGAAGGCTGAATGGGTAGAACAGTATGAGCCCGGTGTTTACATCA CATTAACAACCTTATCATGTGGAAAAAAGGGCCTTAAGCGAGTGAGATTTAGGTAATGTATATTCTAAGCTTGTAATGATCCCAAGTTAAATAATATTGA TGCTTGCACTATCTTTATCCTCACAAACCACTAACAAAATCTAAGGTGGACTCATTTGGATCCCTGAAAAAGTTGTGCAAGTATCATTTCTGCAATTTAA ATACTTAAGTTATGTGTGTTCTTTTACCTGCATAGTTTTTAAAACATGACATTGGTTTTTCAAAATTACAATATTGCGGTTGCGGCTCTGGTTTCAGACC ATAATTTAGAATCTTATGTATTTGTATCAACTTCATTCTTGTACTTCTTTATTTATGAGAATTGGAATGGTAGCATGACCTTATTAGCAGATATTAATAC AGAATGTACCCAGTTCCTTAAATAGTATGTCGAATCTCCATGGCATTTGTGTTTTGCAGCCGGAAACGATTCTCGGAGAAGGAAGCTGAAAGATGGTGGG AAGGGAATCAAGCCACAGTCTACCATAAGTATGATATTGAAGGATATACA BLAST |
| Tissue | pods |
| Gene name | LI_gene_172043; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_453835
| Blastp | PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 39.37% of identity |
|---|---|
| Blastx | PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 55.79% of identity |
| Eggnog | regulator of chromosome condensation(COG5184) |
| Kegg | Link to kegg annotations (AT1G76950) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419884.1) |
| Pfam | Regulator of chromosome condensation (RCC1) repeat (PF00415.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |