Ll_transcript_453840

• Id Trinity: TRINITY_DN49768_c0_g1_i6
• Name Transcript: Ll_transcript_453840
• Sequence: CTGAAATTTATTACAGCTTTCTCTCTTTTTCTCTGCAAAAGCACAACTCACGAGTTGAACAAACAAACAAACAACAAAGACATTGAATGAATGGAAGAAG AAAACATGTTCATAATAAACAAAGTGGGTTACCCATAAAAGGAACTGAAACCTCTTCTTCCACACTTTGTCTTAAGCAACCACTTTTTCTTATGCTTCCT ATGTTGCTCTTTTCATTCAGACACTTCAGAAAGATAGAACTTTTAATCTTATAGCATGAGTGAAACCATTTTCTTCTGCATTCTTATTACATTTCATTAT AAATTTTGTTATTTTTAATGATAAGGTTCTTTCAACTTTCTGCTTCATTTGTCTGCTATTATTCTCTTCTCTATTTTCTTCCATCAAATGATTTGAAGAA CATAACATGACAATGGATGAAGATTCCTTAGCACCACTCACATTTGACAGAACTGTTGAACAGGCAATTGTATCTATAAAGAAAGGCGCATATTTACTTA AATGTGGTCGTCGAGGGAAACCAAAGCTCTGCCCTTTCAGACTTTCTCCGGTAAGCATATGTGAGATGGTAAATTATTTTATGCTGCCAATGTGATCACT CCCTATTGATATGAAACTTGCTTATGCACCATATTTCTTATTGCATTTTGTTCTCCAGATTTGTATAGTTGCATGATATGGTAAACATTCCTTGTTTGAA CATTCATATATTTGTCTTATTCCTTCATACGTTAGGACAAAGCTACTAAAATTTGTCTTTTCCCCTGATTCTAGGATGAGAGAAATTTGATTTGGTACTC CGGGAAACAGGAAAAGTATTTGCAATTGAGTGCAGTTACTGAAATTACTCGAGGGCAGGGTAATATAAGGTCCCATGGGCACGAGGAGCCTGGAAAGGAT AGCCATTCATTTTCGCTAATCTATGCTAATGGTGAACGCTCTCTCGATCTGATATGCAAGGATAAAGCACAGGTTGCTTTGTGGCTTGTTGGCTTGAAAG CAGTGATTTCTCGGTGCCAGCATCCTAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGGGTTCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTCCGAAG AAAGAAAAATCTTGGCCTTCTGGATGAATCTTCTCCATTTACACAGGTACATAGCGTATGCGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCT GATGGATTTTCGTATGCATCTGATAACCTTTATTCCAGAACTCATGCCGTAAAAGATCATTCAGTCCCGAGTTCACCTTACATTGATCCAGATATTCCTT GTAAGGTTGAATCACCATGTCTTCACAAGGAGTACAAGAATTTGTCTTATAGGCCTCTGATGCCTCCACCCTCCCCCCGGATACGAAATAACAATGTATT AAAGGATGTGATGGTATGGGGAGGAGGGATTGGAGGTCCATTAGGGATTGGGAATGAAAAGTTTGTCAACCAACATGGGATTTATTCTTTAGTTCCGAAG TTACTAGAATCCACTATGATGTTAGATGTACAAAATATAGCTCTAGGAGGAAAACATGCTGTCTTGGTTACAAAACAAGGGGAAGTGTTCTGCTGGGGTC AAGGGAAGTGGGGAAGGTTGGGGCAAAAAAATGATATTGACATTAGCTCTCCGAAAATAGTTGATTCTCTTAACGGTATCCATATTAAAAATGTTGCATG TGGTGAATACCATACGTGTGCTTTGACTGATTCCGGTGAAGTATATACATGGGGAAATGATGCTTGTAGTGTAGATTTGGCTGATGAATGGAGAAATAGA AGTCAGTGGATACCACAAAAACTTTCCGGTCCTTTATATGACATTAGTATTTCAAGTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCCATCTGTG GGCGGTTATTTACATATGGAGAAGGTACATTTGGCGTTCTTGGCCACGGCAATTGTAGGAGTTTTTCTCAGCCAAAAGAAGTCGAATCTTTGAGTGGTCT CAGAGTGAGGTCTGTTGCTTGTGGATCGTGGCATACGGCCGCTATTGTAGAAGTCATTGCTGACCATTTTAGGTATAGTACTGCGAGTGGTAAGCTTTTT ACATGGGGTGATGGAGATGAAGGGAGGCTCGGCCATGCTGATAATAGAAGCAAACTTATACCAACATGTGTTTCACAGCTTGTTGACTATGATTTTGTTC AAGTGTCTTGTGGAAGAATGTTGACCGTTGCGCTTACTACTATGGGCAAAGTTTTTGCAATGGGAAGTGCAAAATTTGGACAATTGGGAAATCCACGTGC TAGGGACAAAGCAGTTATGGTTGAAGGACTTCTGAAAAAAGAGTTTGTTAAAGTGATATCATGTGGTTCATATCATGTTGCTGTTCTGACTTCTGCCGGG AGTGTCTATACATGGGGCAAGGGTGAAAATGGTCAACTCGGGCTAGGAAATACTGAAGACAGATTCACCCCTTCTTTTGTTGAAACACTAAGAGATAGGC AGGTGGATGCAATAACTTGTGGCCCAAGCTTCACAGCCGCAATCTGTTTACACAAACCTATTTCTATCAGTGACCAATCAGCATGTAGTAGTTGTAGGTT GCCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGTTTTCTATTCTGCCATGCATGTAGTAGTAAAAAAGCTATCAATGCATCACTAGCC CCAAGTAAGTGCAAGGCTTTTCGGGTTTGTGATCAGTGCTTCGATAAACCTCAAGGAAGTACATATTCTGGAATGGCGTCAAAGTCCGGAAGTTACAACA CTCAACAATTACTGAAGCATCAAAACAAAATTTCCGATCTGACTGATGATAGGGGAGAAACAACAGTAGCACAGAGTGCCATGTCTCTTGGTCAATCATG TTACAGGAAAAGCATGCCGAGTGGACGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCAGCATTTAGAAGATAATTCTTCTGTGTTGAGTGGAGTATCG CGATGGGGGCAAGTTCCATGCCCTGATTCGTTTAACATCAATTGTACAGAACGATCAGTTATGCGTGTTTCTTCATCCAAAAATAAATTAGCCACTGTTT CACCAATAGAAATAGAATCTGCAGCATGCAACTTCACTACTGCTGAGACAGATACAACAAAGTCAGATAAGATGCTCATAGAAGAAGTTCAAAGACTGGG AGCTGAGGCTAGAAGACTTGAAGAGCAGATTGAGCTCAAAAACCAAAAATTACAAGAGTGTCAACAAAAACTCGAGGAGAGTTGGCTTGTGGCTAAGGAG GAAGCTGCTAAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTATCAGGAAAAGATAATGGTGGACAAGAAGAAAAGG TTATACATGAATGTCTGCCTAATTTGGCTCACATACAAACAGATATCAAGAGTCCAAAAGTTAGCAACATGGACAGTCTATCAAATTCACCTATAGTATT TTCCGATACACTAAAATCCAAAATTGGGAGAAGTATGCTCCTTAAAAATGATAAATTATCGGAGAACTTGAACTTCAATAGAGCAGAACCACAAGAAGAC AGCAACAGCTTGAAGGCTGAATGGGTAGAACAGTATGAGCCCGGTGTTTACATCACATTAACAACCTTATCATGTGGAAAAAAGGGCCTTAAGCGAGTGA GATTTAGCCGGAAACGATTCTCGGAGAAGGAAGCTGAAAGATGGTGGGAAGGGAATCAAGCCACAGTCTACCATAAGTATGATATTGAAGGATATACAGA CACAAGACAAAGTTGAAAGGCTAATTATTTACTTGTCACTCATTTTTAGTAGTTTTGTTTTCTCCAGTTATTGGTATAGGTGGTGATTTTGGCTTCATGT TTAAGATTAGAAGTTTAATGCAAGAAATAGTATGCATTCATGTATCTAAGTGTTCCTTTGCTCATGAATATATTGGGGCATTCCATCTTGTGTATAGTCA CTAATAACAGAGTATATCTTAATTTTATTTTAAAGGTTGTTCTAATTTAAACATGTCAAATATATTTCCATAATGTAAAGTTTGTTGTAATTCAACCTTC TACTTCAATTTTCCTAGTACTATTAAGGAATGACATGACAAAG
• Tissue: pods
• Gene name: LI_gene_172043;
• Additional information: details;

Expression of Ll_transcript_453840

FPKM

• PAB: 0
• PNAB: 1
• PS1: 0.6
• PS2: 0.2
• PS3: 0.2
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_453840

• Blastp: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 40% of identity
• Blastx: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 55.79% of identity
• Eggnog: regulator of chromosome condensation(COG5184)
• Kegg: Link to kegg annotations (AT1G76950)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419884.1)
• Pfam: Regulator of chromosome condensation (RCC1) repeat (PF00415.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;