Id Trinity | TRINITY_DN49768_c0_g1_i8 |
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Name Transcript | Ll_transcript_453842 |
Sequence | CTGAAATTTATTACAGCTTTCTCTCTTTTTCTCTGCAAAAGCACAACTCACGAGTTGAACAAACAAACAAACAACAAAGACATTGAATGAATGGAAGAAG AAAACATGTTCATAATAAACAAAGTGGGTTACCCATAAAAGGAACTGAAACCTCTTCTTCCACACTTTGTCTTAAGCAACCACTTTTTCTTATGCTTCCT ATGTTGCTCTTTTCATTCAGACACTTCAGAAAGATAGAACTTTTAATCTTATAGCATGAGTGAAACCATTTTCTTCTGCATTCTTATTACATTTCATTAT AAATTTTGTTATTTTTAATGATAAGGTTCTTTCAACTTTCTGCTTCATTTGTCTGCTATTATTCTCTTCTCTATTTTCTTCCATCAAATGATTTGAAGAA CATAACATGACAATGGATGAAGATTCCTTAGCACCACTCACATTTGACAGAACTGTTGAACAGGCAATTGTATCTATAAAGAAAGGCGCATATTTACTTA AATGTGGTCGTCGAGGGAAACCAAAGCTCTGCCCTTTCAGACTTTCTCCGATAAGGTCCCATGGGCACGAGGAGCCTGGAAAGGATAGCCATTCATTTTC GCTAATCTATGCTAATGGTGAACGCTCTCTCGATCTGATATGCAAGGATAAAGCACAGGTTGCTTTGTGGCTTGTTGGCTTGAAAGCAGTGATTTCTCGG TGCCAGCATCCTAAACCTTTTAGTAGTTTAAGAAGCTGCAAAGGGGTTCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTCCGAAGAAAGAAAAATCTTG GCCTTCTGGATGAATCTTCTCCATTTACACAGGTACATAGCGTATGCGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGATTTTCGTA TGCATCTGATAACCTTTATTCCAGAACTCATGCCGTAAAAGATCATTCAGTCCCGAGTTCACCTTACATTGATCCAGATATTCCTTGTAAGGTTGAATCA CCATGTCTTCACAAGGAGTACAAGAATTTGTCTTATAGGCCTCTGATGCCTCCACCCTCCCCCCGGATACGAAATAACAATGTATTAAAGGATGTGATGG TATGGGGAGGAGGGATTGGAGGTCCATTAGGGATTGGGAATGAAAAGTTTGTCAACCAACATGGGATTTATTCTTTAGTTCCGAAGTTACTAGAATCCAC TATGATGTTAGATGTACAAAATATAGCTCTAGGAGGAAAACATGCTGTCTTGGTTACAAAACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGAAGTGGGGA AGGTTGGGGCAAAAAAATGATATTGACATTAGCTCTCCGAAAATAGTTGATTCTCTTAACGGTATCCATATTAAAAATGTTGCATGTGGTGAATACCATA CGTGTGCTTTGACTGATTCCGGTGAAGTATATACATGGGGAAATGATGCTTGTAGTGTAGATTTGGCTGATGAATGGAGAAATAGAAGTCAGTGGATACC ACAAAAACTTTCCGGTCCTTTATATGACATTAGTATTTCAAGTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCCATCTGTGGGCGGTTATTTACA TATGGAGAAGGTACATTTGGCGTTCTTGGCCACGGCAATTGTAGGAGTTTTTCTCAGCCAAAAGAAGTCGAATCTTTGAGTGGTCTCAGAGTGAGGTCTG TTGCTTGTGGATCGTGGCATACGGCCGCTATTGTAGAAGTCATTGCTGACCATTTTAGGTATAGTACTGCGAGTGGTAAGCTTTTTACATGGGGTGATGG AGATGAAGGGAGGCTCGGCCATGCTGATAATAGAAGCAAACTTATACCAACATGTGTTTCACAGCTTGTTGACTATGATTTTGTTCAAGTGTCTTGTGGA AGAATGTTGACCGTTGCGCTTACTACTATGGGCAAAGTTTTTGCAATGGGAAGTGCAAAATTTGGACAATTGGGAAATCCACGTGCTAGGGACAAAGCAG TTATGGTTGAAGGACTTCTGAAAAAAGAGTTTGTTAAAGTGATATCATGTGGTTCATATCATGTTGCTGTTCTGACTTCTGCCGGGAGTGTCTATACATG GGGCAAGGGTGAAAATGGTCAACTCGGGCTAGGAAATACTGAAGACAGATTCACCCCTTCTTTTGTTGAAACACTAAGAGATAGGCAGGTGGATGCAATA ACTTGTGGCCCAAGCTTCACAGCCGCAATCTGTTTACACAAACCTATTTCTATCAGTGACCAATCAGCATGTAGTAGTTGTAGGTTGCCATTTGGGTTCA CAAGGAAGAAGCATAACTGTTATAACTGTGGTTTTCTATTCTGCCATGCATGTAGTAGTAAAAAAGCTATCAATGCATCACTAGCCCCAAGTAAGTGCAA GGCTTTTCGGGTTTGTGATCAGTGCTTCGATAAACCTCAAGGAAGTACATATTCTGGAATGGCGTCAAAGTCCGGAAGTTACAACACTCAACAATTACTG AAGCATCAAAACAAAATTTCCGATCTGACTGATGATAGGGGAGAAACAACAGTAGCACAGAGTGCCATGTCTCTTGGTCAATCATGTTACAGGAAAAGCA TGCCGAGTGGACGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCAGCATTTAGAAGATAATTCTTCTGTGTTGAGTGGAGTATCGCGATGGGGGCAAGT TCCATGCCCTGATTCGTTTAACATCAATTGTACAGAACGATCAGTTATGCGTGTTTCTTCATCCAAAAATAAATTAGCCACTGTTTCACCAATAGAAATA GAATCTGCAGCATGCAACTTCACTACTGCTGAGACAGATACAACAAAGTCAGATAAGATGCTCATAGAAGAAGTTCAAAGACTGGGAGCTGAGGCTAGAA GACTTGAAGAGCAGATTGAGCTCAAAAACCAAAAATTACAAGAGTGTCAACAAAAACTCGAGGAGAGTTGGCTTGTGGCTAAGGAGGAAGCTGCTAAGAG CAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACATTATCAGGAAAAGATAATGGTGGACAAGAAGAAAAGGTTATACATGAATGT CTGCCTAATTTGGCTCACATACAAACAGATATCAAGAGTCCAAAAGTTAGCAACATGGACAGTCTATCAAATTCACCTATAGTATTTTCCGATACACTAA AATCCAAAATTGGGAGAAGTATGCTCCTTAAAAATGATAAATTATCGGAGAACTTGAACTTCAATAGAGCAGAACCACAAGAAGACAGCAACAGCTTGAA GGCTGAATGGGTAGAACAGTATGAGCCCGGTGTTTACATCACATTAACAACCTTATCATGTGGAAAAAAGGGCCTTAAGCGAGTGAGATTTAGCCGGAAA CGATTCTCGGAGAAGGAAGCTGAAAGATGGTGGGAAGGGAATCAAGCCACAGTCTACCATAAGTATGATATTGAAGGATATACAGACACAAGACAAAGTT GAAAGGCTAATTATTTACTTGTCACTCATTTTTAGTAGTTTTGTTTTCTCCAGTTATTGGTATAGGTGGTGATTTTGGCTTCATGTTTAAGATTAGAAGT TTAATGCAAGAAATAGTATGCATTCATGTATCTAAGTGTTCCTTTGCTCATGAATATATTGGGGCATTCCATCTTGTGTATAGTCACTAATAACAGAGTA TATCTTAATTTTATTTTAAAGGTTGTTCTAATTTAAACATGTCAAATATATTTCCATAATGTAAAGTTTGTTGTAATTCAACCTTCTACTTCAATTTTCC TAGTACTATTAAGGAATGACATGACAAAG BLAST |
Tissue | pods |
Gene name | LI_gene_172043; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_453842
Blastp | PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 40% of identity |
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Blastx | PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 55.79% of identity |
Eggnog | regulator of chromosome condensation(COG5184) |
Kegg | Link to kegg annotations (AT1G76950) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019419884.1) |
Pfam | Regulator of chromosome condensation (RCC1) repeat (PF00415.17) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |