Ll_transcript_454027

• Id Trinity: TRINITY_DN49787_c0_g1_i4
• Name Transcript: Ll_transcript_454027
• Sequence: ATTAATAACACGATTCAATATTAAACCTAAAGAATATTCATGTTAGCCTTCTTCGTATTACTCGGATTAATTCGTCTCTCCCCTAATTCAAACCATGTAT GTATGGAAGCCTCAACCGATGACGTAAGAACAAGGTGTTTTGACCCCATAGTATCTTCCACCATGTTCAAATTCTGAAAACCAGAAGAAGAAACCCTAAT CACGATTCATCACTCCAATTAAACTCTAAACCAATCACTTCACCGCAATCATCGAATCGATTCAACAATGTCTTCATCATCGAGCAGCGGTTTAACATTC AAGCTTCACCCTCTGGTTATCCTCAACATCTCAGACCATTACACTAGGGTCAAGTCTCAGATGAACCCTCCAATATCACCTCACAACGCTACCACCACCA ATGGCGGCGACGCTGTCTGTTCTTCTACTCCGCCGCGGGTCTATGGCTGCGTTATAGGGGTTCAGAAGGGTCGAACCGTTGAGATCTTCAATAGCTTTGA GCTTCTCTATGATTCTTCCAACAATTCCCTTGATCGTCCGTTTCTTGAGAAGAAGCAAGAGCTCTGTTCAGTATTCCTTTTCTCTTTCCGCTATCTGTTT GATAGAGTTTTCATTTTTATGCAATTTTCAATTTTTGAGTTCTTTTGCTTGAGATAGTGGAGAGACCAAGAGAAATTATGATACTGTAGGCGAAATGATG TGAGTGATTTAGATTTTATTATTGGTTTGTCTAAAGATGAGTTGCATATGAAATTATGACATTGTTTATCCGTGTAGCCGACCGCAAATAATGGGGGAAA TGCTTGGCTGTTGTTTGGATTTTGATTACTTAGCTATTTCTTTAGGGCTTTGAGAAAGGCCTTGATGTAACAACAGTGCCATTTGAGTTTTTGTTTTGTT GCGAAGTTGATTTTTCAACTTTGGTTGATTAAGTTGAACATATTTTACCCATTCCTTTTGGTTCGAGCAGCAATGAGCTTGATTACCCTTAATCAAGTCT TGGTTTCAAGCCTTGTGAATAGAACTAATAAGCACTAGGAGGATATACACACACACACATATTTGGTTTCCTAGAGTATCTCCCACCCAATATGTGAAGA CTAAGTTCTTGGGGTATGGTCAGGCTCTCAAGTGATGACCTCTCCCAGTAATATTTTTACATAGACATGAATCTAGAGAACGAATCCAAGCACTGGAAGG ATTAGTTGGAGTGCAAAGTGAATTTTGCATACTTAGTCTTAGACAAAAATAGACATGTTTTCTCTCTCTGAGATGTTTATTTTTCCCTTTAAATTTTAGT ATCAGTTTTTATTCAAAGTTGTTTTTTTTCAGATAAGAAGGTTTTCCCACACTTCTACATACTGGGATGGTATTCGACTGGGAGTGATGCAGAAGAACCA GATATGCTCATTCACAAAGCTCTAATGGATATCAATGAAAGTCCAGTTTATCTTCTTCTCAATCCTTCAATCAATCATTCTCAGAAGGATCTCCCAGTCA GTATTTTCGAAAGCGAACTGCATGTAATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGTTATACTATTGAGACTGTTGAAGCAGAACGGATCTC TGTTGATCATGTTGCACATCTTAAGCCATCTGATGGTGGTTCGGCTGCTACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCTATCAAAATGCTT CATAGTAGAATTAAGGTGTTACATCATTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGA GAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTCATAATGGAATACAATGACACCTTATTGATTAGTTACCTTGCAATGCTGACCAACTG CTCAAGTGCTACAAATGAATTGGTGGACAAATTCAATACTGCATATGAAAGGCATAGCAGAAGAGGTGGACGAACTGCTTTTATGTGAAAGCTGCTTAGA ATTCCTCAAAACACTTCTCCTTTAGACACAGTTTTTTTACTGGTTAGGCATAGGTTATTGAAAGCTTGGATTTGAAGAAAATAGTAAGTAAACAAGTGGA AACTCACCATATCAATATGCACTTCCAATGAAAAAGGTTTTTTGTTTTTGCATTTCCAGTAAGAAATGTTTGCAAAGTTGAGGGGACAAAAGGGTTTAAG GCATTATGAATTTCCTTTATGATCCTTTGTTGAGTCACCCTCCACCATTTTCATGTTTATTTGGTTCTAATTCTCCCCAAGTGATCATTCTTTTGCAGAT TATGTTAGCATAGAGTTTTTAATCTGTTAAGTGTAACATATTGTGGAGTAATTACCTTGTTCCAAGATTTGAATTTGCTAAAAACAAATAACATGACAGT CAATTTGCTTTTCTCTCTGATTATGTAATTATCTGGGGGAATCTAATGGTGCTAT
• Tissue: pods
• Gene name: LI_gene_172216;
• Additional information: details;

Expression of Ll_transcript_454027

FPKM

• PAB: 3.2
• PNAB: 5.3
• PS1: 4.6
• PS2: 3.6
• PS3: 4.3
• PW1: 3
• PW2: 3
• PW3: 2.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_454027

• Blastp: COP9 signalosome complex subunit 6a from Arabidopsis with 82.99% of identity
• Blastx: COP9 signalosome complex subunit 6a from Arabidopsis with 83.87% of identity
• Eggnog: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity)(COG1310)
• Kegg: Link to kegg annotations (AT5G56280)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019420987.1)
• Pfam: Maintenance of mitochondrial structure and function (PF13012.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;