| Id Trinity | TRINITY_DN49787_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_454030 |
| Sequence | GTTTGGCTCTCAAAAGAGGTGATAATATGTTGAAATTCCTCATTTTAGCCATCAAGAATGGAATCAATGTGTTCTGCTTGTGAAACTGTGCTGCTAGATG ATATGAGGAGATCCACAAGGGTTTTGATACACATGAAGTAATCCATAGTTGAGCTAGAACCTTGTGTGATAGATCCTAATTGAGAACGAATGTGACGATC CATGGATTTGGTATGGGAGGGGCAGAAAGCATAAACTTCTTGCTATAACTGCCAAGAGTTATAACAACCAACAACATGTGGTTGTAGGCCTTTAGAAAAC GAGTTCAGGAGTCAAGAAAAAATGGCTTGGTCCTGTTCCTCCCGTAGTAGATAGGCTGGGTTAATCTGATTGATTAATCTATCATCCTCAGATATAGAAA TCTAAATGAAATTTCAGTACCTTTACGAACTTTGAGGTTTGATTTGAGATGATAATCACATTCATGAAGTGTTGCCACACCAAAAAATTAGTATCGATCA TTTTCATTGACGGCATTGGAAGCTTGAGCTGCACTGGCACAGTGTGAAGTGGTACAACACTGGAGAATAGCGGTACTGAAGTCATATGAGGCGGTGGTGA TGCCATATGGGGCGTTGTTCCAGCAGGATCAGTGTTTGTGGCCTTAACCATTGCTCTCTGATACCATTTGAGAAGTTAGAAAACAAAGGAAAATACAATG GAAACCGGAAAGAAAGAGAAATAGAGAAAGGGGGAGAGAAAGGTAACTGCTCTGTAACTGTTTTGTTTTCTATTATTAGAAGTAAATGATATAGTTACAA CTGAGAGCTATTTATAGGAATAGCTTGAACTCTATATTCATAACTGCTCTGTTAGTAGTTTAATTGCACAACTGTCATATGTTTTGACAGCTTGGACAAT TTGTCTATGTCTACAACCATAAACTCTATCCTACTACATAGTATTTATCTCCAGTAAGTGGAAGGATAAAACTGAGAGTGGATAGGTGTAGACCAAGTGG CAGGACCCAAAATTGAACCATGTTAACTGCATGAGTATGATGCATGAGGTGGGACAGCCCCATATAGGATGGATGGGAATGAGTGGAGTGTGGAGGAAAG CCAGGAATATTGTATTGTGAAGATTGAGGAACAAACCCAACCCAACAGGACTGGGACTAGGTCTGGTAGAAGAAGCTAAAACCTGTTGGGACCCCATGAC AAGCTCAATAGATGCCAGCATTGCAGTATCTCATGTCCTGGCTTGTTGGACTTCATCAGTTTTTGTACTCATACTCGATCAATTAAATTAAACCATTTTA TTTTCCTTAGTTTCTATCCTTTGGGAAGGGATGGAGTATTTTCTCTCTTCATTTGTTGGCTTTAAAATGGGTTGTAGTGAAAGCCCATGAAACAATAGTG GATGTAGATGATGGTAGGGTGGGTGAGGTTATGGGAATACATTTGGTGTGCTGATGGGCCTCGATATGGTTTCCTGGTCTGTAGTAGCTGGACAAAAATG CTTTGGTGGTTGGTATTAGTTCATTAGTTAATGGGAAATGTTTTGGAATGTGAGATTGTTTAGAACTCTTGGAATATGAGCTGCTCTGACTCAATGGGTA CCTAAATTTTTCGTTCAGGAATCATAAGCAGTATTACATAGATGACAATATGTTGGAAGATGGAGAAAATAATTACGAGGGTCAAATGCTTATTACAGCT GCATACCATGTGTCGACCCTTTCCCTTCAGAACATTTATGTGTTGGGAGTTTCACCAGAACTATGGCTGTTGTCAGTTGGTACAGGTTATATATAGAGGA TGGAGTAATAATTGAATGTGTGCTTACTCATTTTCCAGGATACTGTCTTTCGCATGTCTCTTTGACACCTGTTATTCCTTGTTTCTGTAAGTTGCATTTA AAGAAATTAAGAGCTTAATTTATGCAATTGCAACTTTTGATTTTTCTTCTGTTATGCATTCTTAAGTTTTGCTATTTTGTTCCATGGTCTGTTAGACAAC GGACTTTAATAAAAACTATCATTACAAAGTACTGTTAGCATTTTGAATCTTATTAACTTTTCTGTGCTAGTTTTTATTTTTTATACAATTTGACGTCATT TTCTGGTTTATATTTAGGTTCTCATATTAAGTTAGATTTTTGTACTTTTTTAAAATTGAAACTCTCTTCCTTTGGCTATGAAGATTAGGTTACTTTAATT TGTGATTATTTCTGATACTCATGCTATAACAGCTAATGGATATCAATGAAAGTCCAGTTTATCTTCTTCTCAATCCTTCAATCAATCATTCTCAGAAGGA TCTCCCAGTCAGTATTTTCGAAAGCGGTATGTAATCTCCATGATTGTATCATCTAGTATGTCATCATTCTTTCAACCTGTTGTTGCTCAGGTGCAGGATC TTTAATATACCTATACAGTATCAAGGAAATGGGTTCAGTTAATTGTACTTCATTTTTATTCTTTTTTCACTGAAGTTGTACCTATTTTGGTACAGAATTA ATATTTTGTCCTGCATAACGTAAATCCTTTCTAATTAGTTTTATAATGCTATATTCTATTTTGACCTACATACTTGGGTGGCTTGTGAAATGTATTTACA ATAAGCAAATTATGTTTGATAAATATGATTACTGACATTAAATTGATCACAGCTAATAAACACAGCATAGTTTCTTCAATATGGTGGTCATGACATCCTA ATATAGCTCATACTTCCTGCAGTGCTTCCCCCTGAATTATTGTTTTTTATTTGTATCAAGACATTTGTGTCAGACTAAATAGTCATGCATTCCAACTTTC AGCTTTCTGCTTTTCAAAAATAAAAATCCTGTATTGTTTTTTTCTTCATTTTTAGTCAAATTTTTATTATCTTTTTGCCTGCCTCTTGTGCTGAGCCAAT GAATTATGTGTTATTGCTGTTCCTGGCTATTGCATTACAGAACTGCATGTAATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGTTATACTATTG AGGTTGGCTTTTTATGACTCTACTTTTAACTCGTTTCACATTCTAAACCATTGTTCTTCAATAAATGATTGACTTGGCACCCTCTTCCCTCTCTTTTTCC TTGCTCCGTTGAAGACTGTTGAAGCAGAACGGATCTCTGTTGATCATGTTGCACATCTTAAGCCATCTGATGGTGGTTCGGCTGCTACACAATTGGCTGC TCACCTTACTGGTATACACAGTGCTATCAAAATGCTTCATAGTAGAATTAAGGTGTTACATCATTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGT GAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTCATAATGGAATACAATGACA CCTTATTGATTAGTTACCTTGCAATGCTGACCAACTGCTCAAGTGCTACAAATGAATTGGTGGACAAATTCAATACTGCATATGAAAGGCATAGCAGAAG AGGTGGACGAACTGCTTTTATGTGAAAGCTGCTTAGAATTCCTCAAAACACTTCTCCTTTAGACACAGTTTTTTTACTGGTTAGGCATAGGTTATTGAAA GCTTGGATTTGAAGAAAATAGTAAGTAAACAAGTGGAAACTCACCATATCAATATGCACTTCCAATGAAAAAGGTTTTTTGTTTTTGCATTTCCAGTAAG AAATGTTTGCAAAGTTGAGGGGACAAAAGGGTTTAAGGCATTATGAATTTCCTTTATGATCCTTTGTTGAGTCACCCTCCACCATTTTCATGTTTATTTG GTTCTAATTCTCCCCAAGTGATCATTCTTTTGCAGATTATGTTAGCATAGAGTTTTTAATCTGTTAAGTGTAACATATTGTGGAGTAATTACCTTGTTCC AAGATTTGAATTTGCTAAAAACAAATAACATGACAGTCAATTTGCTTTTCTCTCTGATTATGTAATTATCTGGGGGAATCTAATGGTGCTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_172216; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_454030
| Blastp | - |
|---|---|
| Blastx | COP9 signalosome complex subunit 6b from Arabidopsis with 80.43% of identity |
| Eggnog | Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity)(COG1310) |
| Kegg | Link to kegg annotations (AT4G26430) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420987.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |