Id Trinity | TRINITY_DN49800_c1_g1_i7 |
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Name Transcript | Ll_transcript_342138 |
Sequence | AGCGAGGATACTCTCTCTCTATTGTGTGTGTTTGTGTCAATTATCGCGACCCACATCGAGGTTGTCATTGGGGTTAGTTTATTTCCTTCAATTCTCTTAT CTTCATGTTGAAAACATTCAAATCCTCTTCCAATCTCACTTCACCCATGCTAATTCGTTTCAAAATCCAATCTTTTCTACTCTCCACTACTACACTTGAT AACAAGGATTTCATCAATGATAATACTATTGACACTGATTGGGAAAGATTGCTTCAACCTTTTGACCATAAACAACTCCTTAGGTCACTTCACCCCATTA GCCCAATTCAGCTCTCTAAATTATTGCAACTCCCACTAGATGTTCCTACCTCAATGGAACTGTTTCAAAAGGTTGGTGCCCAAAAGGGTTATTGCCACAC CTTCAATGTGTATCACATTTTAATTCATAAGCTTGGTGCTGTTGGGGAGTTTAAGATTATAGACAATTTGTTGAAACAAATGAAGCAAGAAAAAGTTGTG TTTAAAGAATCACTTTTTATTCTGATTATGAGATGTTATGGGAAAGCTGGGTTTCCTGGCCAAGCAACAAGGCTTTTGTTGGATATGTGGACTGTTTATT ATTGTTTCCCTACTTTTAAGTCCTACAATGTTGTTTTGGAAATTCTTGTTGCTGGAGATTGTCCTAGAGTTGCACCTAATGTGTTCTATGATATGCTTAG TAGAGGTATTTCTCCGACTGTGTATACATTTGGTGTGGTCATGAAAGCATTGTGTATGATTGATGAGGTTGATTCGGCTTGTTCGCTTCTAAGGGACATG ACAAAGCATGGCTGTGTTCCAAATTCTGTCATTTACCAAACCCTTATTCACGCACTTTCGCAAAACAATAGGGTGAACGAAGCGATGAAGCTTTTGGAGG AAATGTTTTTGATGGGCTGTGAACCTGATGCTCAGACCTTTAATGATGTTATTCATGGCTTCTGCAGGGCTGGTCGGATTCATGAAGCAGCCAAGCTGCT TGATCGAATGCTTCTTCGGGGGTTCAGCGCTGATGCTCTAACTTATGGGTTCTTAATGCATGCGTTGTGCACCAATGGGCAAATTGATGAAGCAAGGGCC TTGCTAGATAAAATTCCCAATCCGAATACTGTGCTCTATAACACATTAATAAATGGCTATGTGGCTAGTGGGCGGTTTGATGAAGCTAAGGATCTTTTGT ACAATAACATGGTAGTTACAGGCTATGAGCCAGATACCTTCACGTTTAACATACTGATCAGTGGACTTTGCAAGAAAGGGTTTTTGGTCTCTGCTCTTGA GTTCTTACATGAGATTGAAATGAAAGGATTTGAACCCAATGTGGTCACATACACCACATTGATAAATGGTTTCTGCAAGCAAGGTCGATTAGAGGATGCA GCTGAAGTTGTGAATAGCATGTCAGCCAAGGGTCTCAGTTTAAATACTGTGGGGTACAATTGCTTGATTAGTGCTCTTTGCAAAGATGGGAGGATTCAAG AAGCTTTGCATATGTTTGGTGAAATGTCAAGCAAAGGAAGTAAACCCGACATTTATACATTCAATTCCTTAATATATGGACTATGCAGGAATGGTGAGAT GGAAGAGGCCTTGGGTTTGTATCAGGACATGTTCGTGGAGGGTGTTATTGCCAACACTGTAACATACAACACACTCATTCATGCATTTCTCAGGAGAGAT TCAATCCAACAAGCGTTTAAGCTTGTTGATGAAATGCTATTCAGAGGGTGCCCTCTTGACAATATTACATATAATGGCCTTATCAAAGCTCTCTGTAAAA CCGGGGCAGTAGAAAAAGGATTGGGCTTGTTTGAAGAAATGCTTGGGAAAGGGATTTTTCCTAATGTTAGCTCTTGCAATATTCTGATCAACGCCTTCTG CAGAGTTGGAAAAGTAAACGACGCTCTTCAATTTCTCCGGGATATGATTCATCGTGGTTTGACACCAGACATAGTCACTTATAACTGCCTGATCAACGGT CTTTGCAAGATTGATCGTGTTCAAGAGGCTTTGAACCTTTTTAACAGGTTACAAGTTGAAGGAATCCATCCCGACGCAGTTACATACAACACACTGCTAA GTAGGCACTGCTATGAGGGTTTATCTGATGAGGCATGTTTACTTTTACATAAAGGTGTGGATAATGGTTTCATACCTAATGAAGTCACTTGGAATATATT GATATGTCATTTTGTGAAAGAAGGGGTCAAGGGGAGTAAAATATTCTTCTAGGGTTGTTATGGTGGAATAGAAAGCTGCTTTCCTTTGAAGCCAAAACAT TCCTTTCAGGTCTCTTTATTTTGCTCCTTGACCCCATTTGATTTGTGTCTTGGCTATCAATTTACTATTAGCATGGGGAATATGACTGCAGAATTTGAAT GATAAGTGAGTGGGGGCAACTAGTAATAGTGTTGATTCTTCAGAAAAAAACACCATCCTTCTCTGGATCTACCTTCTATACAACTAGAACTAGTTATAAC AACTTTGTAATATTAACATGTTCACTTTGAAATATTTGTTAAGCTTATGTGCAGCACTCTTCTCTTAAACATGTAAAGCAATAGGAAGAAGGGTCCTGGT TTAGAACATGGTTATGAAATTGAGATGCTAAATTAGCTCATCAATATTTTTCATCTGAGATCAAAGTCCATGTAGTCGATCCCACTTAGTAGGATAAATG TTTGGTTGTTGTTGTTGATTGATGAAGGATAAACACTTTACAAGAATCAATTGAAAAAATCAGCTTATTTGTGATTTTGAAGATATATTTTCTTAATCTT TGGATGAAAATATTTTGAAGGTTTTGCAGGCTATTTGGAGAGCAATAAGATATAATGGCTGCTAGGATACCTGGTTTAATTGCTTTATTTGATGTTGATG GAACTCTTACAGCTCCGAGGAAGGTATCTATTTCTTATAAAGCTTTACCCTTCATTTGTATGGTTGTTCTGTTATGATTTTAACTGCAAGGTACATCAGA TGCAGCATTTTGAAATCGTTCTGTACCAAATCTATTATATTAAAGTCATCTGAAGTTACTTTAGCTGTTCACTCATCGTAAAAAGAATTTGCGCCCCTCT CTGAACAAGAACAAAACTACAGATCTGGGTGTATTATTTTAGTTGTTTAGCATTGCATTACATCTATTTAATGTTTCTTATTCAAATGCAAGGTGGTTAC TCCAGAGATGTTAAAGTTCATGCAAGAACTACGGAAGGTTGTAACAATTGGAGTTGTTGGTGGATCCGATTTTGTGAAGATATCTGAGCAACTTGGGAAT ACAGTTACCAATGACTATGATTACGTATTTTCTGAGAATGGTCTTCTGGCTCATAAGGAGGGAAAGCTCATTGGAATCCAGAGCTTGAAGGACTTCATTG GGGAAGAAAAGCTCAAGGTAAGGCCTATGTTTCTATTCCAATTCAATGCACTCTTTGCTCATGGGAGACTGTAATTTCTCTTCTTACTACCTCCTTATAT ATGTATCTGGTTGTTACAATATCAAGCATGCATATGCCCATTTAACCTAAAAACAGAAAATATCAAGTTGGGCTAAGACAAGTATATGAATATGAGTTTA TTTTTGTAGATGAGTAGTTTGATTTTGATAAACTTGTGAGGTGTAAAGAAGGCATTTTTATATTTATATTAATCTGCGAAATTGTTATAATGACAGAGTT TGGGATTATTTTGCAGGAAATTATCAACTTTACACTTCATTACATTGCTGATTTGGATATCCCAATTAAAAGGTTAGTGGGATATCTAGAAACTAATCAT ATTTTTTTTCATGTTGGCTATACATACAGGAAGTGTTGAATCCTATTTGACATAATAATATCGTCAGGGGTACATTTATAGAGTCCCG BLAST |
Tissue | pods |
Gene name | LI_gene_172311; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342138
Blastp | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial from Arabidopsis with 59.91% of identity |
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Blastx | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial from Arabidopsis with 59.91% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT5G64320) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_004508428.1) |
Pfam | PPR repeat family (PF13041.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |