Id Trinity | TRINITY_DN49805_c3_g1_i1 |
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Name Transcript | Ll_transcript_342444 |
Sequence | CTTGGTCATATGGGATGATGCAAGTGGAAGATGGTGCTGTGGGTTGGCAACAGAGACTAAAAGCAAAGAATGACACAACACTTTTAGGCTGGAAAATATA TATACCCAGCCCCAGTTTTCAACTCCCACCTTACTACATATAATTCAGGGTCCACTGTCAATAAAATAAAAATAAAAAGAGAGAATGACAGAGAACTCTC CATGACATCCTTGGAGGTGGTCTGGTTGCAGATTTGATACTATGGAGGAGGAAGAATCTAACTGTGGGGATATTGTTGGTTACACTTGCAGCTTGGGTTA TGTTTGAAAGATCTGGTTATACTCTTTTGTCTCTTGTCTCTAATGTACTTCTCCTCCTCATTGTTATTCTTTTTCTATGGGCCAAATCAGCAGCAATTCT AAACAGACCAGCTCCACCTCTACCTAAGTTGCATCTGTCAGAAGAAACGGTGAATGAAGTGGCAGCTTTTATCCGCACTCGAGTTAACGATCTGCTTTCC GCTTCTCAAGACGTCGCCCTGGGTAAAGACTCGAGGCTATTTCTGAAAGTAGCTGCATACCTCTGTTTAATTTCTATAGTTGGTGGCTTGACTGATTTCC TTACCCTGGCATACACCAGTCTCTTTATTGTTCTTACTTTTCCAGCACTGTATGAAAGATATGAAGATTCTATAGACAGAAATATCTTGAAAGGCTGCCG CAAATTATGCCAATTGTATGTGAAAATAAATGTGGAATATGTCAGCAGAGTTCAGAATTGGATTGTGGAGAAGGAAAAGCTGTGCTGATTTTGTTTTTCA CATTCATTTTGATAACTTCACTACTCTTGTAAAATGATTCTTACAGGAACATTGGTGAGTTTATGATTGTGGTTTGGGGAATGGAGGTTTGAGTCTTTCA TCTTCAGTGATGGAACTTTTTGATTTTTGGTACATGATATGATGAAATCTCAAGTTAGACTGGAGCATGCACTCCTCTAAGGATTTCTTGTTAGGTTTAA CCAAAGAAAATATATAGGTGCACATTTTGAAGCGTCTCGAGTGTTCTTATGCGGCCATTCATCCCTGTTTCTGCATTGTATCCGGGTGAGAAGGTGATGT GAAGCAAAAGATGTATCCTGTTTTGACCGGTCAGTTGTGCTTATTTTCGTGCCTTAACAAGTTTCATTATTATTTGGGACATGATGATTTTTCTTAGCGG GGTGATATCGATCAGACTAGCTTGTTGTGTGCTGCCCCATGTCTGATGGGGGAGGTGATGTCGGAATAGGTTGTTAATTTTTTCGGGCTTTTCTCATTCA CTGACTCCTTTTATCTATGGTGGGCAAGTTTAAACTTTACATCTTGTGTTTAAATTGTAAGGTGTCGTTTCGTTTTGCAATGACTTCTCTTTCTTCTAGT GTGTGACTAAAATTAGATGCATCATAAAAGTTTGAACATAGATGGCTAGGTATCAATGACATTGCGTCTATTGTAGGGTGTGTCAATGAGTACATACAGC TTTATCCATGTGGCCCGTTTATAAGCCATGTCATTCCATTTTCATTGTCGTGGACTGAAGGGCGAATCTTATAAGCATTGTAGGATGGTTGATGGGGTTA GAGGCCCCATGGAACAACATGGAAGCTTCAAAAGTTTCGTGGTGATCCCGCATTTCAGTAGTTCGTCATATGGTTTTATGTTAGACGGTATGTCTGTATG AACATGATACCATGAGTAAATGGATATTTGGTGCCACATTCCATGTGAATAATACTTTGACTTGGGAATGATTTGTTGACGTCAGTATGTGGTCTTAGGT CAAGATGGTGCTCATGAATCACATGAGACTCCACTATTTGAATTGTTAGGTAGGTGGAGGGGTTTTGAGTACTATGTTGGCTGGGTCAAACATTTCAAAA TGAGGTTGTACTTGAAATAAAAGTTTGACAATTGTATGAGCTTTTTTTATTGTTCCAGTCACACCAACAACTCCATAGTGGAAGATGCATGGGCATTTGG AAGAGTCTGATGCCGCTCTTGGAGATAGACCCGAAGGAGTTCAACTAGCCTAAAAGGGTTGCTTGAGCTTTAACCAGACTTGAAATCGGCCTTAGAGCGT CTAGTATTGAAGCAGGATGTGTGTTAGCTTTAGATCGCCTTGGGTGGATACCTGAAAAGGGATTCCAAACTCTAG BLAST |
Tissue | pods |
Gene name | LI_gene_172348; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342444
Blastp | Reticulon-like protein B11 from Arabidopsis with 47.29% of identity |
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Blastx | Reticulon-like protein B12 from Arabidopsis with 52.49% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (AT3G19460) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019432008.1) |
Pfam | Reticulon (PF02453.16) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |